A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.8
nTPM
Monaco:
19.0
nTPM
Schmiedel:
18.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.8
HPA sample
nTPM
Classical monocyte nTPM: 1.8
Samples: 6
Max nTPM: 2.5
Min nTPM: 0.8
P10809_1003
2.0
P10809_1020
0.8
P10809_1039
2.5
P10809_1058
2.4
P10809_1080
1.9
P10809_1107
1.5
Intermediate monocyte nTPM: 1.5
Samples: 6
Max nTPM: 2.2
Min nTPM: 0.6
P10809_1004
1.3
P10809_1023
2.1
P10809_1042
1.9
P10809_1061
2.2
P10809_1081
0.8
P10809_1108
0.6
Non-classical monocyte nTPM: 1.3
Samples: 5
Max nTPM: 3.0
Min nTPM: 0.0
P10809_1005
1.1
P10809_1053
3.0
P10809_1072
0.0
P10809_1082
1.7
P10809_1109
0.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.0
Monaco sample
nTPM
Classical monocyte nTPM: 19.0
Samples: 4
Max nTPM: 26.9
Min nTPM: 12.3
RHH5313_R3680
12.3
RHH5221_R3593
22.3
RHH5250_R3622
14.5
RHH5279_R3651
26.9
Intermediate monocyte nTPM: 13.1
Samples: 4
Max nTPM: 15.6
Min nTPM: 6.7
RHH5314_R3681
15.6
RHH5222_R3594
6.7
RHH5251_R3623
14.6
RHH5280_R3652
15.5
Non-classical monocyte nTPM: 16.4
Samples: 4
Max nTPM: 28.0
Min nTPM: 10.9
RHH5315_R3682
11.2
RHH5223_R3595
10.9
RHH5252_R3624
15.3
RHH5281_R3653
28.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.0
Schmiedel sample id
TPM
Classical monocyte TPM: 18.0
Samples: 91
Max TPM: 39.3
Min TPM: 9.8
MONOCYTES_1
39.3
MONOCYTES_2
27.2
MONOCYTES_3
26.5
MONOCYTES_4
25.8
MONOCYTES_5
25.6
MONOCYTES_6
24.7
MONOCYTES_7
23.8
MONOCYTES_8
23.4
MONOCYTES_9
23.0
MONOCYTES_10
22.8
MONOCYTES_11
22.7
MONOCYTES_12
22.6
MONOCYTES_13
21.6
MONOCYTES_14
21.5
MONOCYTES_15
21.4
MONOCYTES_16
21.4
MONOCYTES_17
21.3
MONOCYTES_18
21.0
MONOCYTES_19
20.9
MONOCYTES_20
20.7
MONOCYTES_21
20.7
MONOCYTES_22
20.7
MONOCYTES_23
20.6
MONOCYTES_24
20.3
MONOCYTES_25
20.2
MONOCYTES_26
19.8
MONOCYTES_27
19.7
MONOCYTES_28
19.6
MONOCYTES_29
19.6
MONOCYTES_30
19.5
MONOCYTES_31
19.4
MONOCYTES_32
19.2
MONOCYTES_33
19.0
MONOCYTES_34
18.9
MONOCYTES_35
18.8
MONOCYTES_36
18.7
MONOCYTES_37
18.6
MONOCYTES_38
18.6
MONOCYTES_39
18.6
MONOCYTES_40
18.3
MONOCYTES_41
18.3
MONOCYTES_42
18.2
MONOCYTES_43
18.0
MONOCYTES_44
18.0
MONOCYTES_45
17.8
MONOCYTES_46
17.6
MONOCYTES_47
17.6
MONOCYTES_48
17.5
MONOCYTES_49
17.4
MONOCYTES_50
17.3
MONOCYTES_51
17.1
MONOCYTES_52
17.0
MONOCYTES_53
16.8
MONOCYTES_54
16.8
MONOCYTES_55
16.7
MONOCYTES_56
16.4
MONOCYTES_57
16.2
MONOCYTES_58
16.2
MONOCYTES_59
16.1
MONOCYTES_60
16.1
MONOCYTES_61
16.0
MONOCYTES_62
15.8
MONOCYTES_63
15.7
MONOCYTES_64
15.5
MONOCYTES_65
15.4
MONOCYTES_66
15.4
MONOCYTES_67
15.4
MONOCYTES_68
15.3
MONOCYTES_69
15.2
MONOCYTES_70
14.9
MONOCYTES_71
14.7
MONOCYTES_72
14.7
MONOCYTES_73
14.4
MONOCYTES_74
14.4
MONOCYTES_75
14.2
MONOCYTES_76
14.2
MONOCYTES_77
14.2
MONOCYTES_78
13.9
MONOCYTES_79
13.6
MONOCYTES_80
13.5
MONOCYTES_81
13.4
MONOCYTES_82
13.4
MONOCYTES_83
13.3
MONOCYTES_84
13.2
MONOCYTES_85
13.1
MONOCYTES_86
13.0
MONOCYTES_87
12.5
MONOCYTES_88
11.9
MONOCYTES_89
11.7
MONOCYTES_90
11.5
MONOCYTES_91
9.8
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Non-classical monocyte TPM: 15.1
Samples: 90
Max TPM: 21.5
Min TPM: 9.7
M2_1
21.5
M2_2
21.4
M2_3
20.6
M2_4
20.4
M2_5
20.0
M2_6
19.6
M2_7
19.3
M2_8
19.1
M2_9
19.0
M2_10
18.9
M2_11
18.8
M2_12
18.6
M2_13
18.4
M2_14
18.4
M2_15
17.8
M2_16
17.5
M2_17
17.3
M2_18
17.2
M2_19
17.1
M2_20
16.9
M2_21
16.9
M2_22
16.6
M2_23
16.6
M2_24
16.5
M2_25
16.5
M2_26
16.5
M2_27
16.3
M2_28
16.3
M2_29
16.3
M2_30
16.2
M2_31
16.2
M2_32
16.0
M2_33
16.0
M2_34
15.9
M2_35
15.8
M2_36
15.8
M2_37
15.7
M2_38
15.7
M2_39
15.6
M2_40
15.5
M2_41
15.4
M2_42
15.1
M2_43
15.0
M2_44
14.9
M2_45
14.8
M2_46
14.7
M2_47
14.7
M2_48
14.6
M2_49
14.6
M2_50
14.6
M2_51
14.5
M2_52
14.5
M2_53
14.4
M2_54
14.4
M2_55
14.3
M2_56
14.3
M2_57
14.1
M2_58
14.1
M2_59
14.0
M2_60
14.0
M2_61
13.9
M2_62
13.7
M2_63
13.7
M2_64
13.6
M2_65
13.5
M2_66
13.3
M2_67
13.1
M2_68
13.0
M2_69
13.0
M2_70
12.9
M2_71
12.9
M2_72
12.9
M2_73
12.7
M2_74
12.7
M2_75
12.6
M2_76
12.6
M2_77
12.5
M2_78
12.4
M2_79
12.3
M2_80
12.2
M2_81
11.9
M2_82
11.5
M2_83
11.5
M2_84
11.5
M2_85
11.3
M2_86
11.3
M2_87
11.2
M2_88
10.5
M2_89
10.4
M2_90
9.7
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