A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
387.7
nTPM
Monaco:
2120.4
nTPM
Schmiedel:
1458.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
387.7
HPA sample
nTPM
Classical monocyte nTPM: 126.8
Samples: 6
Max nTPM: 307.0
Min nTPM: 59.4
P10809_1003
307.0
P10809_1020
107.0
P10809_1039
92.2
P10809_1058
59.4
P10809_1080
60.2
P10809_1107
135.0
Intermediate monocyte nTPM: 260.0
Samples: 6
Max nTPM: 648.9
Min nTPM: 61.1
P10809_1004
648.9
P10809_1023
164.5
P10809_1042
202.5
P10809_1061
166.6
P10809_1081
61.1
P10809_1108
316.1
Non-classical monocyte nTPM: 387.7
Samples: 5
Max nTPM: 892.1
Min nTPM: 163.0
P10809_1005
892.1
P10809_1053
163.0
P10809_1072
254.0
P10809_1082
198.2
P10809_1109
431.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2120.4
Monaco sample
nTPM
Classical monocyte nTPM: 811.7
Samples: 4
Max nTPM: 1294.3
Min nTPM: 574.8
RHH5313_R3680
574.8
RHH5221_R3593
1294.3
RHH5250_R3622
592.7
RHH5279_R3651
785.1
Intermediate monocyte nTPM: 1838.0
Samples: 4
Max nTPM: 2887.4
Min nTPM: 804.3
RHH5314_R3681
1853.3
RHH5222_R3594
2887.4
RHH5251_R3623
1807.0
RHH5280_R3652
804.3
Non-classical monocyte nTPM: 2120.4
Samples: 4
Max nTPM: 2748.6
Min nTPM: 843.5
RHH5315_R3682
2748.6
RHH5223_R3595
2514.7
RHH5252_R3624
2374.7
RHH5281_R3653
843.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1458.1
Schmiedel sample id
TPM
Classical monocyte TPM: 681.8
Samples: 91
Max TPM: 990.6
Min TPM: 275.5
MONOCYTES_1
990.6
MONOCYTES_2
939.1
MONOCYTES_3
897.1
MONOCYTES_4
879.4
MONOCYTES_5
878.9
MONOCYTES_6
874.1
MONOCYTES_7
873.0
MONOCYTES_8
857.5
MONOCYTES_9
852.9
MONOCYTES_10
830.5
MONOCYTES_11
826.6
MONOCYTES_12
826.5
MONOCYTES_13
825.3
MONOCYTES_14
823.3
MONOCYTES_15
817.1
MONOCYTES_16
813.8
MONOCYTES_17
809.9
MONOCYTES_18
808.0
MONOCYTES_19
807.8
MONOCYTES_20
804.8
MONOCYTES_21
802.9
MONOCYTES_22
792.3
MONOCYTES_23
791.5
MONOCYTES_24
787.7
MONOCYTES_25
787.1
MONOCYTES_26
786.3
MONOCYTES_27
784.0
MONOCYTES_28
783.7
MONOCYTES_29
777.8
MONOCYTES_30
777.0
MONOCYTES_31
773.3
MONOCYTES_32
771.8
MONOCYTES_33
766.7
MONOCYTES_34
766.2
MONOCYTES_35
762.3
MONOCYTES_36
761.7
MONOCYTES_37
730.9
MONOCYTES_38
722.4
MONOCYTES_39
719.5
MONOCYTES_40
715.8
MONOCYTES_41
715.8
MONOCYTES_42
710.4
MONOCYTES_43
709.4
MONOCYTES_44
709.2
MONOCYTES_45
687.1
MONOCYTES_46
686.7
MONOCYTES_47
684.1
MONOCYTES_48
675.2
MONOCYTES_49
661.1
MONOCYTES_50
660.1
MONOCYTES_51
658.0
MONOCYTES_52
654.8
MONOCYTES_53
649.4
MONOCYTES_54
647.6
MONOCYTES_55
647.2
MONOCYTES_56
640.4
MONOCYTES_57
635.0
MONOCYTES_58
618.9
MONOCYTES_59
614.7
MONOCYTES_60
604.0
MONOCYTES_61
603.4
MONOCYTES_62
602.9
MONOCYTES_63
602.2
MONOCYTES_64
600.9
MONOCYTES_65
600.3
MONOCYTES_66
597.9
MONOCYTES_67
593.6
MONOCYTES_68
584.6
MONOCYTES_69
583.6
MONOCYTES_70
581.9
MONOCYTES_71
580.9
MONOCYTES_72
577.9
MONOCYTES_73
555.8
MONOCYTES_74
554.0
MONOCYTES_75
553.2
MONOCYTES_76
548.9
MONOCYTES_77
548.7
MONOCYTES_78
543.2
MONOCYTES_79
530.0
MONOCYTES_80
527.5
MONOCYTES_81
526.2
MONOCYTES_82
515.5
MONOCYTES_83
513.5
MONOCYTES_84
497.9
MONOCYTES_85
472.4
MONOCYTES_86
459.1
MONOCYTES_87
436.5
MONOCYTES_88
425.8
MONOCYTES_89
398.1
MONOCYTES_90
381.7
MONOCYTES_91
275.5
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Non-classical monocyte TPM: 1458.1
Samples: 90
Max TPM: 2152.7
Min TPM: 516.1
M2_1
2152.7
M2_2
2074.4
M2_3
2055.7
M2_4
2038.3
M2_5
2037.0
M2_6
1988.5
M2_7
1979.4
M2_8
1957.3
M2_9
1948.9
M2_10
1938.3
M2_11
1919.1
M2_12
1916.6
M2_13
1908.2
M2_14
1882.0
M2_15
1881.8
M2_16
1858.4
M2_17
1854.9
M2_18
1838.5
M2_19
1835.9
M2_20
1797.9
M2_21
1789.8
M2_22
1766.8
M2_23
1759.1
M2_24
1747.1
M2_25
1742.7
M2_26
1741.0
M2_27
1731.7
M2_28
1725.7
M2_29
1706.0
M2_30
1702.9
M2_31
1684.9
M2_32
1684.4
M2_33
1679.3
M2_34
1668.8
M2_35
1661.2
M2_36
1645.6
M2_37
1621.2
M2_38
1605.5
M2_39
1596.1
M2_40
1592.2
M2_41
1591.6
M2_42
1585.2
M2_43
1572.1
M2_44
1567.4
M2_45
1555.6
M2_46
1547.5
M2_47
1543.1
M2_48
1526.8
M2_49
1523.7
M2_50
1471.7
M2_51
1464.2
M2_52
1461.7
M2_53
1450.7
M2_54
1374.6
M2_55
1366.7
M2_56
1366.6
M2_57
1353.2
M2_58
1324.2
M2_59
1306.5
M2_60
1280.9
M2_61
1271.6
M2_62
1264.0
M2_63
1260.6
M2_64
1242.8
M2_65
1227.3
M2_66
1201.0
M2_67
1168.2
M2_68
1162.5
M2_69
1148.2
M2_70
1076.0
M2_71
1070.6
M2_72
1064.1
M2_73
1050.7
M2_74
971.5
M2_75
965.1
M2_76
950.0
M2_77
935.4
M2_78
929.8
M2_79
918.3
M2_80
899.0
M2_81
881.3
M2_82
874.9
M2_83
848.8
M2_84
831.1
M2_85
796.3
M2_86
790.9
M2_87
692.5
M2_88
641.1
M2_89
627.6
M2_90
516.1
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