A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.6
nTPM
Monaco:
12.4
nTPM
Schmiedel:
15.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.6
HPA sample
nTPM
Memory B-cell nTPM: 7.6
Samples: 6
Max nTPM: 11.2
Min nTPM: 3.6
P10809_1017
4.8
P10809_1025
11.2
P10809_1044
3.6
P10809_1063
8.7
P10809_1092
7.4
P10809_1105
9.6
Naive B-cell nTPM: 7.1
Samples: 6
Max nTPM: 11.6
Min nTPM: 2.2
P10809_1011
2.2
P10809_1029
10.2
P10809_1048
11.6
P10809_1067
5.7
P10809_1091
6.3
P10809_1104
6.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 11.0
Samples: 4
Max nTPM: 13.1
Min nTPM: 6.8
RHH5310_R3677
12.3
RHH5218_R3590
6.8
RHH5247_R3619
13.1
RHH5276_R3648
11.7
Naive B-cell nTPM: 8.7
Samples: 4
Max nTPM: 10.6
Min nTPM: 6.3
RHH5308_R3675
10.6
RHH5216_R3588
7.5
RHH5245_R3617
6.3
RHH5274_R3646
10.4
Non-switched memory B-cell nTPM: 8.4
Samples: 4
Max nTPM: 11.3
Min nTPM: 6.6
RHH5309_R3676
8.3
RHH5217_R3589
7.2
RHH5246_R3618
11.3
RHH5275_R3647
6.6
Plasmablast nTPM: 11.8
Samples: 4
Max nTPM: 20.3
Min nTPM: 6.1
RHH5312_R3679
12.0
RHH5220_R3592
8.7
RHH5249_R3621
20.3
RHH5278_R3650
6.1
Switched memory B-cell nTPM: 12.5
Samples: 4
Max nTPM: 18.2
Min nTPM: 6.7
RHH5311_R3678
18.2
RHH5219_R3591
6.7
RHH5248_R3620
16.0
RHH5277_R3649
8.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.2
Schmiedel sample id
TPM
Naive B-cell TPM: 15.2
Samples: 91
Max TPM: 23.0
Min TPM: 7.9
B_CELL_NAIVE_1
23.0
B_CELL_NAIVE_2
22.0
B_CELL_NAIVE_3
20.6
B_CELL_NAIVE_4
20.3
B_CELL_NAIVE_5
19.7
B_CELL_NAIVE_6
19.6
B_CELL_NAIVE_7
19.5
B_CELL_NAIVE_8
19.1
B_CELL_NAIVE_9
19.0
B_CELL_NAIVE_10
18.6
B_CELL_NAIVE_11
18.5
B_CELL_NAIVE_12
18.4
B_CELL_NAIVE_13
18.3
B_CELL_NAIVE_14
18.2
B_CELL_NAIVE_15
17.8
B_CELL_NAIVE_16
17.7
B_CELL_NAIVE_17
17.5
B_CELL_NAIVE_18
17.4
B_CELL_NAIVE_19
17.4
B_CELL_NAIVE_20
17.4
B_CELL_NAIVE_21
17.2
B_CELL_NAIVE_22
16.8
B_CELL_NAIVE_23
16.7
B_CELL_NAIVE_24
16.6
B_CELL_NAIVE_25
16.5
B_CELL_NAIVE_26
16.5
B_CELL_NAIVE_27
16.4
B_CELL_NAIVE_28
16.4
B_CELL_NAIVE_29
16.4
B_CELL_NAIVE_30
16.3
B_CELL_NAIVE_31
16.1
B_CELL_NAIVE_32
16.1
B_CELL_NAIVE_33
16.0
B_CELL_NAIVE_34
16.0
B_CELL_NAIVE_35
15.8
B_CELL_NAIVE_36
15.8
B_CELL_NAIVE_37
15.8
B_CELL_NAIVE_38
15.8
B_CELL_NAIVE_39
15.7
B_CELL_NAIVE_40
15.7
B_CELL_NAIVE_41
15.5
B_CELL_NAIVE_42
15.5
B_CELL_NAIVE_43
15.5
B_CELL_NAIVE_44
15.0
B_CELL_NAIVE_45
15.0
B_CELL_NAIVE_46
15.0
B_CELL_NAIVE_47
14.9
B_CELL_NAIVE_48
14.9
B_CELL_NAIVE_49
14.9
B_CELL_NAIVE_50
14.9
B_CELL_NAIVE_51
14.8
B_CELL_NAIVE_52
14.6
B_CELL_NAIVE_53
14.6
B_CELL_NAIVE_54
14.6
B_CELL_NAIVE_55
14.3
B_CELL_NAIVE_56
14.2
B_CELL_NAIVE_57
14.2
B_CELL_NAIVE_58
14.1
B_CELL_NAIVE_59
13.9
B_CELL_NAIVE_60
13.7
B_CELL_NAIVE_61
13.7
B_CELL_NAIVE_62
13.7
B_CELL_NAIVE_63
13.7
B_CELL_NAIVE_64
13.6
B_CELL_NAIVE_65
13.6
B_CELL_NAIVE_66
13.6
B_CELL_NAIVE_67
13.5
B_CELL_NAIVE_68
13.5
B_CELL_NAIVE_69
13.4
B_CELL_NAIVE_70
13.2
B_CELL_NAIVE_71
12.9
B_CELL_NAIVE_72
12.9
B_CELL_NAIVE_73
12.7
B_CELL_NAIVE_74
12.6
B_CELL_NAIVE_75
12.6
B_CELL_NAIVE_76
12.4
B_CELL_NAIVE_77
12.3
B_CELL_NAIVE_78
12.2
B_CELL_NAIVE_79
12.1
B_CELL_NAIVE_80
12.1
B_CELL_NAIVE_81
12.0
B_CELL_NAIVE_82
11.9
B_CELL_NAIVE_83
11.9
B_CELL_NAIVE_84
11.9
B_CELL_NAIVE_85
11.8
B_CELL_NAIVE_86
11.6
B_CELL_NAIVE_87
11.4
B_CELL_NAIVE_88
11.0
B_CELL_NAIVE_89
10.8
B_CELL_NAIVE_90
10.0
B_CELL_NAIVE_91
7.9
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
