GRN
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • GRN
EVOLUTIONARY VAGINA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Breast & female reproductive system
Evolutionary methods
VAGINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:196.8 nTPM
GTEx:196.8 nTPM
FANTOM5:145.8 Scaled Tags Per Million
Macaque:56.2 nTPM
Mouse:79.4 nTPM
Rat:105.7 nTPM

VAGINA - Annotated protein expression
Pending normal tissue analysis

VAGINA - PROTEINTALKS DB MS
Median intensity ND
Sample Intensity
Vagina_01
ND

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.8
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 196.8
Samples: 170

Max nTPM: 466.1
Min nTPM: 57.9
Std nTPM: 92.5
Median nTPM: 187.4
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 466.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 454.7
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 451.6
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 423.9
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 409.9
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 403.9
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 386.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 383.6
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 378.0
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 375.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 363.3
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 361.9
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 354.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 351.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 347.5
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 333.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 329.9
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 318.1
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 312.9
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 305.4
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 303.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 302.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 300.0
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 299.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 293.9
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 291.6
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 286.0
GTEX-11I78-2026-SM-5987C 50-59 years, female 282.8
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 280.6
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 280.0
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 279.7
GTEX-14PKU-1326-SM-6871B 40-49 years, female 279.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 273.9
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 273.5
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 267.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 266.7
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 264.9
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 264.8
GTEX-1C475-0526-SM-793AC 40-49 years, female 263.9
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 260.4
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 257.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 252.1
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 252.0
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 251.7
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 249.4
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 249.2
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 244.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 241.3
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 241.2
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 239.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 238.9
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 238.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 237.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 236.3
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 236.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 235.2
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 234.5
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 233.6
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 233.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 232.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 232.1
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 232.0
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 229.1
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 224.9
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 224.1
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 219.9
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 219.7
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 219.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 218.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 218.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 216.8
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 214.7
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 213.3
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 212.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 210.9
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 210.4
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 208.8
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 205.3
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 199.7
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 192.3
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 192.0
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 189.4
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 189.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 187.9
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 187.5
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 187.2
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 180.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 177.3
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 176.4
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 176.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 165.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 164.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 163.1
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 161.0
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 160.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 160.1
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 158.8
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 158.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 158.1
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 155.5
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 155.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 154.4
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 152.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 152.0
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 150.1
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 149.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 144.0
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 143.2
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 142.8
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 142.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 139.8
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 139.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 138.0
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 137.7
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 137.6
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 136.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 136.5
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 133.5
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 121.7
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 121.4
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 120.3
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 119.2
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 115.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 115.8
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 114.8
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 113.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 112.1
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 112.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 111.7
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 111.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 110.7
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 109.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 109.3
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 108.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 108.8
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 106.8
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 106.2
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 105.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 105.1
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 105.0
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 104.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 101.4
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 101.0
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 100.1
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 99.3
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 98.6
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 97.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 96.9
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 95.2
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 94.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 94.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 94.7
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 94.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 92.8
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 92.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 92.0
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 90.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 90.5
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 90.0
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 89.3
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 88.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 84.6
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 81.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 80.4
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 79.8
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 73.2
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 73.0
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 72.4
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 65.8
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 57.9
Show allShow less

VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

145.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 145.8
FF:10204-103F6 68 years, female 145.8

VAGINA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.2
Macaque sample Sample description nTPM
Vagina
nTPM: 56.2
Samples: 1

Max nTPM: 56.2
Min nTPM: 56.2
Sample A 56.2

VAGINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.4
Mouse sample Sample description nTPM
Vagina
nTPM: 79.5
Samples: 2

Max nTPM: 97.7
Min nTPM: 61.2
Sample A 61.2
Sample B 97.7

VAGINA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.7
Rat sample Sample description nTPM
Vagina
nTPM: 105.7
Samples: 2

Max nTPM: 117.2
Min nTPM: 94.2
Sample A 117.2
Sample A 94.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.