A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
227.5
nTPM
Monaco:
280.3
nTPM
Schmiedel:
116.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
227.5
HPA sample
nTPM
Classical monocyte nTPM: 194.1
Samples: 6
Max nTPM: 280.4
Min nTPM: 151.3
P10809_1003
196.1
P10809_1020
213.5
P10809_1039
280.4
P10809_1058
151.3
P10809_1080
158.4
P10809_1107
164.8
Intermediate monocyte nTPM: 212.3
Samples: 6
Max nTPM: 272.4
Min nTPM: 162.1
P10809_1004
169.2
P10809_1023
272.4
P10809_1042
227.1
P10809_1061
259.7
P10809_1081
162.1
P10809_1108
183.2
Non-classical monocyte nTPM: 227.5
Samples: 5
Max nTPM: 295.0
Min nTPM: 163.5
P10809_1005
179.0
P10809_1053
295.0
P10809_1072
275.2
P10809_1082
163.5
P10809_1109
225.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
280.3
Monaco sample
nTPM
Classical monocyte nTPM: 251.4
Samples: 4
Max nTPM: 276.6
Min nTPM: 233.6
RHH5313_R3680
256.2
RHH5221_R3593
276.6
RHH5250_R3622
239.0
RHH5279_R3651
233.6
Intermediate monocyte nTPM: 230.5
Samples: 4
Max nTPM: 249.4
Min nTPM: 212.7
RHH5314_R3681
226.0
RHH5222_R3594
212.7
RHH5251_R3623
233.8
RHH5280_R3652
249.4
Non-classical monocyte nTPM: 280.3
Samples: 4
Max nTPM: 317.5
Min nTPM: 247.9
RHH5315_R3682
317.5
RHH5223_R3595
282.0
RHH5252_R3624
273.7
RHH5281_R3653
247.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
116.5
Schmiedel sample id
TPM
Classical monocyte TPM: 83.3
Samples: 91
Max TPM: 97.7
Min TPM: 66.4
MONOCYTES_1
97.7
MONOCYTES_2
97.6
MONOCYTES_3
94.2
MONOCYTES_4
93.7
MONOCYTES_5
93.7
MONOCYTES_6
93.2
MONOCYTES_7
93.0
MONOCYTES_8
92.9
MONOCYTES_9
92.6
MONOCYTES_10
92.2
MONOCYTES_11
91.8
MONOCYTES_12
91.6
MONOCYTES_13
90.4
MONOCYTES_14
90.4
MONOCYTES_15
90.1
MONOCYTES_16
89.9
MONOCYTES_17
89.9
MONOCYTES_18
89.7
MONOCYTES_19
89.7
MONOCYTES_20
89.5
MONOCYTES_21
88.9
MONOCYTES_22
88.3
MONOCYTES_23
88.3
MONOCYTES_24
88.2
MONOCYTES_25
88.1
MONOCYTES_26
88.1
MONOCYTES_27
87.3
MONOCYTES_28
87.2
MONOCYTES_29
87.2
MONOCYTES_30
87.1
MONOCYTES_31
87.1
MONOCYTES_32
86.6
MONOCYTES_33
86.1
MONOCYTES_34
85.5
MONOCYTES_35
85.3
MONOCYTES_36
85.2
MONOCYTES_37
85.1
MONOCYTES_38
84.9
MONOCYTES_39
84.8
MONOCYTES_40
84.2
MONOCYTES_41
84.2
MONOCYTES_42
84.2
MONOCYTES_43
83.7
MONOCYTES_44
83.7
MONOCYTES_45
83.6
MONOCYTES_46
83.2
MONOCYTES_47
82.8
MONOCYTES_48
82.8
MONOCYTES_49
82.8
MONOCYTES_50
82.7
MONOCYTES_51
82.2
MONOCYTES_52
82.0
MONOCYTES_53
81.8
MONOCYTES_54
81.7
MONOCYTES_55
81.5
MONOCYTES_56
81.2
MONOCYTES_57
81.2
MONOCYTES_58
80.7
MONOCYTES_59
80.6
MONOCYTES_60
80.5
MONOCYTES_61
80.0
MONOCYTES_62
79.9
MONOCYTES_63
79.8
MONOCYTES_64
79.8
MONOCYTES_65
79.7
MONOCYTES_66
79.5
MONOCYTES_67
79.2
MONOCYTES_68
79.0
MONOCYTES_69
79.0
MONOCYTES_70
79.0
MONOCYTES_71
78.6
MONOCYTES_72
78.2
MONOCYTES_73
78.1
MONOCYTES_74
77.9
MONOCYTES_75
77.1
MONOCYTES_76
76.9
MONOCYTES_77
76.5
MONOCYTES_78
76.3
MONOCYTES_79
76.2
MONOCYTES_80
76.2
MONOCYTES_81
75.6
MONOCYTES_82
75.0
MONOCYTES_83
74.9
MONOCYTES_84
73.7
MONOCYTES_85
72.5
MONOCYTES_86
72.1
MONOCYTES_87
69.9
MONOCYTES_88
69.5
MONOCYTES_89
68.0
MONOCYTES_90
67.4
MONOCYTES_91
66.4
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Non-classical monocyte TPM: 116.5
Samples: 90
Max TPM: 132.3
Min TPM: 89.0
M2_1
132.3
M2_2
132.0
M2_3
131.2
M2_4
130.5
M2_5
130.0
M2_6
128.8
M2_7
127.0
M2_8
127.0
M2_9
126.4
M2_10
126.3
M2_11
125.8
M2_12
125.8
M2_13
125.3
M2_14
125.3
M2_15
125.0
M2_16
125.0
M2_17
124.7
M2_18
124.1
M2_19
124.0
M2_20
123.8
M2_21
123.7
M2_22
123.7
M2_23
122.8
M2_24
122.7
M2_25
122.4
M2_26
122.1
M2_27
122.0
M2_28
121.5
M2_29
121.3
M2_30
121.0
M2_31
120.9
M2_32
120.8
M2_33
120.6
M2_34
120.1
M2_35
120.0
M2_36
120.0
M2_37
119.7
M2_38
119.4
M2_39
119.4
M2_40
119.3
M2_41
119.3
M2_42
119.3
M2_43
119.1
M2_44
118.9
M2_45
118.7
M2_46
118.6
M2_47
118.0
M2_48
117.9
M2_49
117.7
M2_50
117.4
M2_51
115.7
M2_52
115.7
M2_53
113.5
M2_54
113.4
M2_55
113.4
M2_56
113.3
M2_57
113.1
M2_58
112.7
M2_59
112.5
M2_60
112.1
M2_61
111.9
M2_62
111.6
M2_63
111.4
M2_64
111.3
M2_65
110.7
M2_66
110.6
M2_67
110.4
M2_68
110.2
M2_69
110.1
M2_70
109.7
M2_71
109.6
M2_72
109.5
M2_73
109.3
M2_74
109.3
M2_75
108.7
M2_76
108.2
M2_77
107.8
M2_78
107.8
M2_79
106.7
M2_80
105.7
M2_81
105.6
M2_82
104.6
M2_83
104.0
M2_84
103.6
M2_85
103.1
M2_86
101.8
M2_87
100.9
M2_88
97.9
M2_89
96.4
M2_90
89.0
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