A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.3
nTPM
Monaco:
28.8
nTPM
Schmiedel:
26.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.3
HPA sample
nTPM
Classical monocyte nTPM: 3.4
Samples: 6
Max nTPM: 4.3
Min nTPM: 2.5
P10809_1003
4.1
P10809_1020
4.3
P10809_1039
2.7
P10809_1058
2.5
P10809_1080
3.7
P10809_1107
3.1
Intermediate monocyte nTPM: 3.6
Samples: 6
Max nTPM: 7.0
Min nTPM: 1.7
P10809_1004
5.1
P10809_1023
3.3
P10809_1042
1.7
P10809_1061
7.0
P10809_1081
2.7
P10809_1108
1.8
Non-classical monocyte nTPM: 4.3
Samples: 5
Max nTPM: 9.0
Min nTPM: 2.4
P10809_1005
2.8
P10809_1053
4.0
P10809_1072
9.0
P10809_1082
3.4
P10809_1109
2.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.8
Monaco sample
nTPM
Classical monocyte nTPM: 25.5
Samples: 4
Max nTPM: 29.3
Min nTPM: 22.0
RHH5313_R3680
24.0
RHH5221_R3593
26.7
RHH5250_R3622
29.3
RHH5279_R3651
22.0
Intermediate monocyte nTPM: 27.5
Samples: 4
Max nTPM: 32.2
Min nTPM: 21.8
RHH5314_R3681
29.3
RHH5222_R3594
32.2
RHH5251_R3623
21.8
RHH5280_R3652
26.9
Non-classical monocyte nTPM: 28.8
Samples: 4
Max nTPM: 31.2
Min nTPM: 27.3
RHH5315_R3682
27.5
RHH5223_R3595
31.2
RHH5252_R3624
29.4
RHH5281_R3653
27.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.4
Schmiedel sample id
TPM
Classical monocyte TPM: 19.0
Samples: 91
Max TPM: 23.5
Min TPM: 15.2
MONOCYTES_1
23.5
MONOCYTES_2
22.9
MONOCYTES_3
22.4
MONOCYTES_4
22.4
MONOCYTES_5
22.4
MONOCYTES_6
22.4
MONOCYTES_7
22.1
MONOCYTES_8
22.0
MONOCYTES_9
21.5
MONOCYTES_10
21.4
MONOCYTES_11
21.4
MONOCYTES_12
21.2
MONOCYTES_13
20.9
MONOCYTES_14
20.9
MONOCYTES_15
20.8
MONOCYTES_16
20.7
MONOCYTES_17
20.6
MONOCYTES_18
20.5
MONOCYTES_19
20.5
MONOCYTES_20
20.5
MONOCYTES_21
20.3
MONOCYTES_22
20.3
MONOCYTES_23
20.2
MONOCYTES_24
20.2
MONOCYTES_25
20.2
MONOCYTES_26
20.2
MONOCYTES_27
20.2
MONOCYTES_28
20.0
MONOCYTES_29
20.0
MONOCYTES_30
19.9
MONOCYTES_31
19.9
MONOCYTES_32
19.8
MONOCYTES_33
19.7
MONOCYTES_34
19.6
MONOCYTES_35
19.6
MONOCYTES_36
19.5
MONOCYTES_37
19.5
MONOCYTES_38
19.4
MONOCYTES_39
19.4
MONOCYTES_40
19.4
MONOCYTES_41
19.4
MONOCYTES_42
19.3
MONOCYTES_43
19.3
MONOCYTES_44
19.2
MONOCYTES_45
19.2
MONOCYTES_46
19.0
MONOCYTES_47
19.0
MONOCYTES_48
18.9
MONOCYTES_49
18.9
MONOCYTES_50
18.9
MONOCYTES_51
18.9
MONOCYTES_52
18.8
MONOCYTES_53
18.8
MONOCYTES_54
18.7
MONOCYTES_55
18.6
MONOCYTES_56
18.5
MONOCYTES_57
18.4
MONOCYTES_58
18.3
MONOCYTES_59
18.1
MONOCYTES_60
18.0
MONOCYTES_61
18.0
MONOCYTES_62
17.6
MONOCYTES_63
17.6
MONOCYTES_64
17.5
MONOCYTES_65
17.5
MONOCYTES_66
17.5
MONOCYTES_67
17.4
MONOCYTES_68
17.4
MONOCYTES_69
17.4
MONOCYTES_70
17.4
MONOCYTES_71
17.3
MONOCYTES_72
17.3
MONOCYTES_73
17.1
MONOCYTES_74
17.0
MONOCYTES_75
17.0
MONOCYTES_76
17.0
MONOCYTES_77
16.9
MONOCYTES_78
16.9
MONOCYTES_79
16.7
MONOCYTES_80
16.5
MONOCYTES_81
16.5
MONOCYTES_82
16.4
MONOCYTES_83
16.4
MONOCYTES_84
16.3
MONOCYTES_85
16.3
MONOCYTES_86
16.2
MONOCYTES_87
16.1
MONOCYTES_88
15.9
MONOCYTES_89
15.8
MONOCYTES_90
15.3
MONOCYTES_91
15.2
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Non-classical monocyte TPM: 26.4
Samples: 90
Max TPM: 34.2
Min TPM: 19.8
M2_1
34.2
M2_2
33.2
M2_3
32.7
M2_4
32.0
M2_5
31.9
M2_6
31.8
M2_7
31.3
M2_8
30.6
M2_9
30.5
M2_10
30.4
M2_11
30.4
M2_12
30.4
M2_13
30.2
M2_14
30.1
M2_15
29.4
M2_16
29.3
M2_17
29.0
M2_18
28.9
M2_19
28.5
M2_20
28.5
M2_21
28.2
M2_22
28.1
M2_23
28.0
M2_24
27.9
M2_25
27.9
M2_26
27.8
M2_27
27.8
M2_28
27.7
M2_29
27.7
M2_30
27.5
M2_31
27.3
M2_32
27.2
M2_33
27.2
M2_34
27.1
M2_35
27.0
M2_36
27.0
M2_37
26.9
M2_38
26.9
M2_39
26.9
M2_40
26.8
M2_41
26.6
M2_42
26.5
M2_43
26.5
M2_44
26.3
M2_45
26.2
M2_46
26.1
M2_47
25.9
M2_48
25.8
M2_49
25.8
M2_50
25.7
M2_51
25.7
M2_52
25.7
M2_53
25.7
M2_54
25.6
M2_55
25.5
M2_56
25.3
M2_57
25.2
M2_58
25.2
M2_59
25.1
M2_60
25.0
M2_61
25.0
M2_62
25.0
M2_63
24.8
M2_64
24.7
M2_65
24.6
M2_66
24.6
M2_67
24.3
M2_68
24.2
M2_69
24.1
M2_70
24.0
M2_71
23.8
M2_72
23.8
M2_73
23.7
M2_74
23.6
M2_75
23.6
M2_76
23.3
M2_77
23.3
M2_78
23.0
M2_79
23.0
M2_80
23.0
M2_81
22.9
M2_82
22.7
M2_83
22.6
M2_84
22.4
M2_85
22.1
M2_86
22.1
M2_87
21.7
M2_88
21.6
M2_89
21.1
M2_90
19.8
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