A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.4
nTPM
Monaco:
51.7
nTPM
Schmiedel:
51.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.4
HPA sample
nTPM
Classical monocyte nTPM: 4.4
Samples: 6
Max nTPM: 9.3
Min nTPM: 1.5
P10809_1003
9.3
P10809_1020
3.7
P10809_1039
1.5
P10809_1058
3.3
P10809_1080
4.0
P10809_1107
4.8
Intermediate monocyte nTPM: 3.4
Samples: 6
Max nTPM: 8.1
Min nTPM: 0.8
P10809_1004
8.1
P10809_1023
1.5
P10809_1042
0.8
P10809_1061
4.3
P10809_1081
2.8
P10809_1108
3.2
Non-classical monocyte nTPM: 3.9
Samples: 5
Max nTPM: 6.0
Min nTPM: 2.8
P10809_1005
6.0
P10809_1053
3.0
P10809_1072
4.2
P10809_1082
2.8
P10809_1109
3.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.7
Monaco sample
nTPM
Classical monocyte nTPM: 51.7
Samples: 4
Max nTPM: 58.5
Min nTPM: 41.1
RHH5313_R3680
50.5
RHH5221_R3593
56.5
RHH5250_R3622
58.5
RHH5279_R3651
41.1
Intermediate monocyte nTPM: 38.6
Samples: 4
Max nTPM: 47.3
Min nTPM: 32.8
RHH5314_R3681
32.8
RHH5222_R3594
47.3
RHH5251_R3623
39.2
RHH5280_R3652
35.0
Non-classical monocyte nTPM: 43.7
Samples: 4
Max nTPM: 48.2
Min nTPM: 33.5
RHH5315_R3682
46.2
RHH5223_R3595
48.2
RHH5252_R3624
47.0
RHH5281_R3653
33.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.4
Schmiedel sample id
TPM
Classical monocyte TPM: 51.4
Samples: 91
Max TPM: 77.6
Min TPM: 28.1
MONOCYTES_1
77.6
MONOCYTES_2
76.2
MONOCYTES_3
73.1
MONOCYTES_4
73.0
MONOCYTES_5
72.5
MONOCYTES_6
71.7
MONOCYTES_7
69.7
MONOCYTES_8
68.6
MONOCYTES_9
68.0
MONOCYTES_10
67.6
MONOCYTES_11
66.9
MONOCYTES_12
66.8
MONOCYTES_13
66.5
MONOCYTES_14
65.3
MONOCYTES_15
65.0
MONOCYTES_16
64.7
MONOCYTES_17
63.4
MONOCYTES_18
62.3
MONOCYTES_19
61.9
MONOCYTES_20
61.0
MONOCYTES_21
60.9
MONOCYTES_22
60.8
MONOCYTES_23
60.5
MONOCYTES_24
60.4
MONOCYTES_25
60.0
MONOCYTES_26
59.7
MONOCYTES_27
59.1
MONOCYTES_28
58.7
MONOCYTES_29
58.7
MONOCYTES_30
58.7
MONOCYTES_31
58.5
MONOCYTES_32
58.2
MONOCYTES_33
58.1
MONOCYTES_34
58.0
MONOCYTES_35
57.9
MONOCYTES_36
56.5
MONOCYTES_37
56.3
MONOCYTES_38
53.6
MONOCYTES_39
53.0
MONOCYTES_40
52.3
MONOCYTES_41
51.8
MONOCYTES_42
51.8
MONOCYTES_43
51.3
MONOCYTES_44
51.0
MONOCYTES_45
50.5
MONOCYTES_46
50.2
MONOCYTES_47
49.4
MONOCYTES_48
49.3
MONOCYTES_49
49.0
MONOCYTES_50
48.7
MONOCYTES_51
48.5
MONOCYTES_52
48.4
MONOCYTES_53
48.2
MONOCYTES_54
48.0
MONOCYTES_55
47.7
MONOCYTES_56
47.5
MONOCYTES_57
47.2
MONOCYTES_58
47.1
MONOCYTES_59
46.6
MONOCYTES_60
46.0
MONOCYTES_61
45.9
MONOCYTES_62
45.5
MONOCYTES_63
45.3
MONOCYTES_64
44.5
MONOCYTES_65
43.6
MONOCYTES_66
43.0
MONOCYTES_67
42.5
MONOCYTES_68
42.1
MONOCYTES_69
42.0
MONOCYTES_70
41.7
MONOCYTES_71
41.7
MONOCYTES_72
41.4
MONOCYTES_73
41.1
MONOCYTES_74
40.3
MONOCYTES_75
39.1
MONOCYTES_76
39.0
MONOCYTES_77
38.7
MONOCYTES_78
37.5
MONOCYTES_79
37.4
MONOCYTES_80
35.9
MONOCYTES_81
35.4
MONOCYTES_82
34.7
MONOCYTES_83
32.9
MONOCYTES_84
32.5
MONOCYTES_85
32.1
MONOCYTES_86
30.4
MONOCYTES_87
30.4
MONOCYTES_88
30.4
MONOCYTES_89
29.6
MONOCYTES_90
28.3
MONOCYTES_91
28.1
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Non-classical monocyte TPM: 35.6
Samples: 90
Max TPM: 60.1
Min TPM: 13.9
M2_1
60.1
M2_2
58.3
M2_3
56.8
M2_4
55.6
M2_5
55.3
M2_6
54.0
M2_7
51.8
M2_8
51.6
M2_9
51.5
M2_10
50.9
M2_11
48.7
M2_12
48.2
M2_13
47.6
M2_14
46.8
M2_15
46.7
M2_16
46.6
M2_17
46.5
M2_18
46.1
M2_19
45.6
M2_20
45.5
M2_21
45.3
M2_22
44.4
M2_23
44.2
M2_24
43.8
M2_25
43.8
M2_26
43.1
M2_27
42.6
M2_28
42.4
M2_29
42.2
M2_30
41.4
M2_31
41.2
M2_32
40.4
M2_33
40.4
M2_34
40.1
M2_35
39.5
M2_36
39.5
M2_37
39.2
M2_38
39.1
M2_39
38.8
M2_40
37.8
M2_41
36.8
M2_42
36.8
M2_43
36.6
M2_44
36.2
M2_45
35.9
M2_46
35.7
M2_47
35.1
M2_48
35.1
M2_49
34.4
M2_50
33.5
M2_51
33.4
M2_52
32.8
M2_53
32.6
M2_54
32.6
M2_55
32.3
M2_56
31.7
M2_57
30.2
M2_58
29.8
M2_59
29.6
M2_60
29.5
M2_61
29.5
M2_62
28.9
M2_63
28.4
M2_64
27.9
M2_65
27.4
M2_66
26.4
M2_67
26.4
M2_68
26.2
M2_69
25.7
M2_70
25.5
M2_71
25.1
M2_72
25.0
M2_73
24.6
M2_74
24.3
M2_75
22.9
M2_76
22.6
M2_77
21.6
M2_78
21.4
M2_79
21.4
M2_80
21.1
M2_81
20.6
M2_82
20.4
M2_83
20.3
M2_84
19.9
M2_85
19.0
M2_86
19.0
M2_87
18.8
M2_88
17.7
M2_89
14.5
M2_90
13.9
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