A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.9
nTPM
Monaco:
74.1
nTPM
Schmiedel:
126.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.9
HPA sample
nTPM
Classical monocyte nTPM: 3.1
Samples: 6
Max nTPM: 4.4
Min nTPM: 2.3
P10809_1003
4.4
P10809_1020
2.3
P10809_1039
3.2
P10809_1058
3.4
P10809_1080
2.3
P10809_1107
3.1
Intermediate monocyte nTPM: 1.8
Samples: 6
Max nTPM: 2.8
Min nTPM: 0.6
P10809_1004
1.9
P10809_1023
0.7
P10809_1042
0.6
P10809_1061
2.8
P10809_1081
2.6
P10809_1108
1.9
Non-classical monocyte nTPM: 4.9
Samples: 5
Max nTPM: 13.3
Min nTPM: 1.9
P10809_1005
3.0
P10809_1053
1.9
P10809_1072
13.3
P10809_1082
3.1
P10809_1109
3.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.1
Monaco sample
nTPM
Classical monocyte nTPM: 74.1
Samples: 4
Max nTPM: 93.5
Min nTPM: 54.3
RHH5313_R3680
68.1
RHH5221_R3593
93.5
RHH5250_R3622
54.3
RHH5279_R3651
80.6
Intermediate monocyte nTPM: 61.0
Samples: 4
Max nTPM: 75.8
Min nTPM: 47.1
RHH5314_R3681
58.9
RHH5222_R3594
62.2
RHH5251_R3623
75.8
RHH5280_R3652
47.1
Non-classical monocyte nTPM: 73.5
Samples: 4
Max nTPM: 110.4
Min nTPM: 50.0
RHH5315_R3682
50.0
RHH5223_R3595
110.4
RHH5252_R3624
76.5
RHH5281_R3653
57.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
126.1
Schmiedel sample id
TPM
Classical monocyte TPM: 126.1
Samples: 91
Max TPM: 179.3
Min TPM: 96.2
MONOCYTES_1
179.3
MONOCYTES_2
163.5
MONOCYTES_3
156.9
MONOCYTES_4
155.6
MONOCYTES_5
150.5
MONOCYTES_6
149.8
MONOCYTES_7
148.2
MONOCYTES_8
147.6
MONOCYTES_9
145.8
MONOCYTES_10
145.3
MONOCYTES_11
143.4
MONOCYTES_12
142.4
MONOCYTES_13
141.4
MONOCYTES_14
140.8
MONOCYTES_15
140.1
MONOCYTES_16
140.0
MONOCYTES_17
139.1
MONOCYTES_18
138.8
MONOCYTES_19
138.3
MONOCYTES_20
136.3
MONOCYTES_21
135.8
MONOCYTES_22
135.7
MONOCYTES_23
134.5
MONOCYTES_24
134.2
MONOCYTES_25
134.1
MONOCYTES_26
134.1
MONOCYTES_27
133.7
MONOCYTES_28
131.5
MONOCYTES_29
131.1
MONOCYTES_30
130.6
MONOCYTES_31
128.9
MONOCYTES_32
128.4
MONOCYTES_33
128.2
MONOCYTES_34
127.9
MONOCYTES_35
127.7
MONOCYTES_36
127.7
MONOCYTES_37
127.3
MONOCYTES_38
127.3
MONOCYTES_39
127.0
MONOCYTES_40
126.7
MONOCYTES_41
126.4
MONOCYTES_42
126.3
MONOCYTES_43
125.8
MONOCYTES_44
125.5
MONOCYTES_45
125.5
MONOCYTES_46
125.4
MONOCYTES_47
125.2
MONOCYTES_48
124.5
MONOCYTES_49
124.3
MONOCYTES_50
124.3
MONOCYTES_51
123.4
MONOCYTES_52
123.4
MONOCYTES_53
123.2
MONOCYTES_54
123.0
MONOCYTES_55
123.0
MONOCYTES_56
122.4
MONOCYTES_57
122.4
MONOCYTES_58
121.9
MONOCYTES_59
121.8
MONOCYTES_60
121.5
MONOCYTES_61
121.5
MONOCYTES_62
120.1
MONOCYTES_63
119.9
MONOCYTES_64
118.9
MONOCYTES_65
118.1
MONOCYTES_66
117.8
MONOCYTES_67
117.5
MONOCYTES_68
116.3
MONOCYTES_69
114.6
MONOCYTES_70
114.6
MONOCYTES_71
114.5
MONOCYTES_72
114.3
MONOCYTES_73
113.9
MONOCYTES_74
112.6
MONOCYTES_75
112.2
MONOCYTES_76
111.9
MONOCYTES_77
111.5
MONOCYTES_78
111.3
MONOCYTES_79
110.7
MONOCYTES_80
109.9
MONOCYTES_81
109.1
MONOCYTES_82
108.9
MONOCYTES_83
106.5
MONOCYTES_84
106.1
MONOCYTES_85
105.7
MONOCYTES_86
104.5
MONOCYTES_87
102.8
MONOCYTES_88
102.2
MONOCYTES_89
101.1
MONOCYTES_90
97.3
MONOCYTES_91
96.2
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Non-classical monocyte TPM: 124.6
Samples: 90
Max TPM: 181.3
Min TPM: 85.5
M2_1
181.3
M2_2
158.0
M2_3
158.0
M2_4
154.7
M2_5
153.6
M2_6
153.1
M2_7
152.1
M2_8
151.6
M2_9
149.0
M2_10
147.2
M2_11
146.7
M2_12
146.3
M2_13
145.2
M2_14
144.1
M2_15
143.8
M2_16
143.6
M2_17
141.3
M2_18
140.2
M2_19
140.0
M2_20
139.2
M2_21
136.7
M2_22
134.7
M2_23
134.2
M2_24
133.8
M2_25
133.6
M2_26
132.9
M2_27
132.2
M2_28
131.3
M2_29
130.8
M2_30
130.4
M2_31
129.5
M2_32
129.2
M2_33
128.9
M2_34
128.1
M2_35
127.8
M2_36
126.5
M2_37
125.7
M2_38
124.7
M2_39
124.5
M2_40
124.2
M2_41
123.8
M2_42
123.5
M2_43
123.3
M2_44
123.0
M2_45
122.9
M2_46
122.1
M2_47
122.1
M2_48
122.1
M2_49
121.8
M2_50
120.8
M2_51
120.2
M2_52
119.9
M2_53
119.3
M2_54
119.0
M2_55
118.6
M2_56
117.5
M2_57
117.1
M2_58
116.6
M2_59
116.5
M2_60
116.3
M2_61
116.2
M2_62
116.2
M2_63
115.9
M2_64
115.2
M2_65
115.1
M2_66
114.7
M2_67
113.1
M2_68
112.9
M2_69
112.8
M2_70
111.9
M2_71
111.2
M2_72
110.9
M2_73
110.5
M2_74
109.8
M2_75
108.6
M2_76
108.5
M2_77
106.9
M2_78
106.6
M2_79
105.2
M2_80
104.1
M2_81
104.0
M2_82
103.9
M2_83
102.8
M2_84
101.6
M2_85
100.8
M2_86
99.7
M2_87
98.2
M2_88
98.0
M2_89
95.6
M2_90
85.5
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