A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
31.4
nTPM
Monaco:
116.5
nTPM
Schmiedel:
47.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.4
HPA sample
nTPM
Classical monocyte nTPM: 31.4
Samples: 6
Max nTPM: 50.1
Min nTPM: 20.7
P10809_1003
50.1
P10809_1020
32.1
P10809_1039
31.8
P10809_1058
26.1
P10809_1080
27.5
P10809_1107
20.7
Intermediate monocyte nTPM: 23.8
Samples: 6
Max nTPM: 30.7
Min nTPM: 19.2
P10809_1004
26.5
P10809_1023
21.1
P10809_1042
25.0
P10809_1061
30.7
P10809_1081
19.2
P10809_1108
20.1
Non-classical monocyte nTPM: 25.6
Samples: 5
Max nTPM: 35.2
Min nTPM: 17.1
P10809_1005
29.3
P10809_1053
25.6
P10809_1072
35.2
P10809_1082
20.9
P10809_1109
17.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
116.5
Monaco sample
nTPM
Classical monocyte nTPM: 116.5
Samples: 4
Max nTPM: 130.7
Min nTPM: 90.2
RHH5313_R3680
128.5
RHH5221_R3593
116.6
RHH5250_R3622
90.2
RHH5279_R3651
130.7
Intermediate monocyte nTPM: 94.7
Samples: 4
Max nTPM: 110.8
Min nTPM: 78.4
RHH5314_R3681
78.4
RHH5222_R3594
91.6
RHH5251_R3623
97.8
RHH5280_R3652
110.8
Non-classical monocyte nTPM: 101.1
Samples: 4
Max nTPM: 117.3
Min nTPM: 89.8
RHH5315_R3682
99.8
RHH5223_R3595
117.3
RHH5252_R3624
97.6
RHH5281_R3653
89.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.6
Schmiedel sample id
TPM
Classical monocyte TPM: 40.7
Samples: 91
Max TPM: 56.7
Min TPM: 26.9
MONOCYTES_1
56.7
MONOCYTES_2
53.4
MONOCYTES_3
51.6
MONOCYTES_4
51.1
MONOCYTES_5
50.7
MONOCYTES_6
50.1
MONOCYTES_7
50.0
MONOCYTES_8
49.9
MONOCYTES_9
49.4
MONOCYTES_10
49.2
MONOCYTES_11
48.6
MONOCYTES_12
48.3
MONOCYTES_13
47.8
MONOCYTES_14
47.3
MONOCYTES_15
47.1
MONOCYTES_16
46.7
MONOCYTES_17
46.5
MONOCYTES_18
46.4
MONOCYTES_19
46.0
MONOCYTES_20
45.5
MONOCYTES_21
45.4
MONOCYTES_22
45.3
MONOCYTES_23
45.2
MONOCYTES_24
44.4
MONOCYTES_25
44.2
MONOCYTES_26
44.2
MONOCYTES_27
44.1
MONOCYTES_28
43.7
MONOCYTES_29
43.7
MONOCYTES_30
43.2
MONOCYTES_31
43.0
MONOCYTES_32
42.9
MONOCYTES_33
42.7
MONOCYTES_34
42.6
MONOCYTES_35
42.3
MONOCYTES_36
42.2
MONOCYTES_37
42.2
MONOCYTES_38
42.0
MONOCYTES_39
42.0
MONOCYTES_40
41.8
MONOCYTES_41
41.6
MONOCYTES_42
41.6
MONOCYTES_43
41.6
MONOCYTES_44
41.1
MONOCYTES_45
40.9
MONOCYTES_46
40.4
MONOCYTES_47
40.4
MONOCYTES_48
40.4
MONOCYTES_49
39.7
MONOCYTES_50
39.6
MONOCYTES_51
39.2
MONOCYTES_52
38.9
MONOCYTES_53
38.8
MONOCYTES_54
38.7
MONOCYTES_55
38.5
MONOCYTES_56
38.5
MONOCYTES_57
38.3
MONOCYTES_58
38.2
MONOCYTES_59
38.2
MONOCYTES_60
38.0
MONOCYTES_61
37.9
MONOCYTES_62
37.5
MONOCYTES_63
37.4
MONOCYTES_64
37.3
MONOCYTES_65
37.2
MONOCYTES_66
36.9
MONOCYTES_67
36.4
MONOCYTES_68
36.4
MONOCYTES_69
36.2
MONOCYTES_70
36.1
MONOCYTES_71
36.0
MONOCYTES_72
35.6
MONOCYTES_73
35.4
MONOCYTES_74
35.4
MONOCYTES_75
35.4
MONOCYTES_76
35.0
MONOCYTES_77
34.9
MONOCYTES_78
34.5
MONOCYTES_79
34.1
MONOCYTES_80
33.9
MONOCYTES_81
33.0
MONOCYTES_82
32.9
MONOCYTES_83
32.7
MONOCYTES_84
31.9
MONOCYTES_85
31.5
MONOCYTES_86
31.2
MONOCYTES_87
30.7
MONOCYTES_88
30.0
MONOCYTES_89
29.5
MONOCYTES_90
29.1
MONOCYTES_91
26.9
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Non-classical monocyte TPM: 47.6
Samples: 90
Max TPM: 74.4
Min TPM: 35.2
M2_1
74.4
M2_2
70.1
M2_3
69.2
M2_4
63.7
M2_5
61.0
M2_6
60.1
M2_7
59.6
M2_8
58.7
M2_9
58.2
M2_10
57.5
M2_11
57.2
M2_12
57.1
M2_13
57.1
M2_14
55.8
M2_15
55.7
M2_16
55.5
M2_17
55.4
M2_18
54.6
M2_19
54.3
M2_20
53.5
M2_21
53.5
M2_22
52.9
M2_23
52.5
M2_24
51.8
M2_25
51.8
M2_26
51.1
M2_27
51.0
M2_28
50.1
M2_29
49.8
M2_30
49.5
M2_31
49.4
M2_32
48.9
M2_33
48.7
M2_34
48.0
M2_35
47.8
M2_36
47.7
M2_37
47.3
M2_38
47.1
M2_39
47.0
M2_40
46.7
M2_41
46.4
M2_42
46.3
M2_43
46.1
M2_44
46.0
M2_45
45.9
M2_46
45.9
M2_47
45.8
M2_48
45.7
M2_49
45.5
M2_50
45.4
M2_51
45.2
M2_52
44.9
M2_53
44.9
M2_54
44.8
M2_55
44.8
M2_56
44.6
M2_57
44.1
M2_58
43.9
M2_59
43.7
M2_60
43.1
M2_61
42.9
M2_62
42.9
M2_63
42.9
M2_64
42.8
M2_65
42.8
M2_66
42.5
M2_67
42.4
M2_68
41.9
M2_69
41.8
M2_70
41.8
M2_71
41.7
M2_72
41.3
M2_73
41.2
M2_74
40.7
M2_75
40.5
M2_76
40.4
M2_77
39.7
M2_78
39.5
M2_79
39.1
M2_80
39.1
M2_81
38.9
M2_82
38.6
M2_83
38.5
M2_84
37.0
M2_85
36.9
M2_86
36.8
M2_87
36.5
M2_88
36.3
M2_89
36.2
M2_90
35.2
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