A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.1
nTPM
Monaco:
38.5
nTPM
Schmiedel:
55.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
HPA sample
nTPM
NK-cell nTPM: 1.1
Samples: 6
Max nTPM: 4.3
Min nTPM: 0.0
P10809_1013
4.3
P10809_1033
1.3
P10809_1052
0.0
P10809_1071
0.1
P10809_1093
0.0
P10809_1103
0.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.5
Monaco sample
nTPM
NK-cell nTPM: 38.5
Samples: 4
Max nTPM: 64.5
Min nTPM: 16.8
RHH5316_R3683
16.8
RHH5224_R3596
48.3
RHH5253_R3625
64.5
RHH5282_R3654
24.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.6
Schmiedel sample id
TPM
NK-cell TPM: 55.6
Samples: 90
Max TPM: 129.5
Min TPM: 10.6
NK_1
129.5
NK_2
113.6
NK_3
101.9
NK_4
92.5
NK_5
91.6
NK_6
90.0
NK_7
84.9
NK_8
83.6
NK_9
81.1
NK_10
80.9
NK_11
79.8
NK_12
79.6
NK_13
78.7
NK_14
73.4
NK_15
73.4
NK_16
71.9
NK_17
71.9
NK_18
69.6
NK_19
68.3
NK_20
66.9
NK_21
66.8
NK_22
66.4
NK_23
65.9
NK_24
64.7
NK_25
64.5
NK_26
62.7
NK_27
62.4
NK_28
62.3
NK_29
62.2
NK_30
62.1
NK_31
61.7
NK_32
59.4
NK_33
59.0
NK_34
58.9
NK_35
58.6
NK_36
57.6
NK_37
56.4
NK_38
56.2
NK_39
55.8
NK_40
55.3
NK_41
55.3
NK_42
54.5
NK_43
54.1
NK_44
53.9
NK_45
53.9
NK_46
53.7
NK_47
53.6
NK_48
53.0
NK_49
52.8
NK_50
51.9
NK_51
51.5
NK_52
50.7
NK_53
50.6
NK_54
50.1
NK_55
49.0
NK_56
48.9
NK_57
48.8
NK_58
47.2
NK_59
46.7
NK_60
46.4
NK_61
45.2
NK_62
44.8
NK_63
44.7
NK_64
43.8
NK_65
43.2
NK_66
42.2
NK_67
41.4
NK_68
41.1
NK_69
40.0
NK_70
40.0
NK_71
39.9
NK_72
39.8
NK_73
39.6
NK_74
38.9
NK_75
38.6
NK_76
37.3
NK_77
37.2
NK_78
36.2
NK_79
35.5
NK_80
34.0
NK_81
33.5
NK_82
33.3
NK_83
32.6
NK_84
31.8
NK_85
30.6
NK_86
30.0
NK_87
28.3
NK_88
23.9
NK_89
18.3
NK_90
10.6
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