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  • TMSB10
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2869.3 nTPM
HPA Brain:831.8 nTPM
GTEx:2869.3 nTPM
FANTOM5:917.3 Scaled Tags Per Million
Mouse:0.0 nTPM
Allen mouse:20.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

831.8
Sample id Sample description nTPM
Amygdala
nTPM: 776.2
2814 Male, age 76, right hemisphere 849.4
2517 Female, age 94, left hemisphere 825.0
2695 Female, age 67, right hemisphere 813.5
2514 Male, age 75, right hemisphere 722.2
1987 Female, age 91, left hemisphere 670.8
Basal amygdala
nTPM: 794.7
2243 Female, age 91, right hemisphere 944.9
2110 Male, age 80, left hemisphere 850.2
2685 Female, age 94, left hemisphere 810.6
1955 Male, age 76, both hemispheres 786.8
2827 Female, age 67, right hemisphere 694.3
2609 Male, age 75, right hemisphere 681.6
Central amygdala
nTPM: 761.8
2826 Female, age 94, left hemisphere 1033.5
2239 Male, age 80, left hemisphere 813.6
1905 Male, age 76, both hemispheres 735.5
2515 Male, age 75, right hemisphere 666.0
2701 Female, age 91, right hemisphere 560.6
Corticomedial amygdala
nTPM: 831.8
2829 Male, age 80, left hemisphere 925.5
2240 Male, age 76, both hemispheres 908.0
2429 Female, age 94, left hemisphere 861.2
2242 Female, age 91, right hemisphere 859.1
2535 Female, age 67, right hemisphere 775.1
2428 Male, age 75, right hemisphere 661.7
Lateral amygdala
nTPM: 750.3
2534 Female, age 94, left hemisphere 1028.0
2830 Female, age 67, right hemisphere 829.8
1883 Male, age 76, both hemispheres 763.3
2516 Male, age 75, right hemisphere 691.9
2256 Male, age 80, left hemisphere 625.1
2255 Female, age 91, right hemisphere 564.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2869.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 2869.3
Samples: 181

Max nTPM: 10469.6
Min nTPM: 947.5
Std nTPM: 1331.1
Median nTPM: 2675.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 10469.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 9211.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 8421.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 7944.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 6988.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 5733.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 5275.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 4941.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 4689.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 4598.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 4533.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 4330.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 4276.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 4264.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 4222.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 4209.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 4142.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 4133.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 4131.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 4120.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 4119.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 4103.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 4099.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 3987.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 3983.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 3975.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 3958.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 3880.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 3879.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 3855.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 3794.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 3789.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 3787.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 3741.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 3614.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 3558.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3490.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 3457.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 3447.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 3434.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 3424.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 3340.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 3299.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 3290.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 3264.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 3256.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 3247.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 3217.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 3215.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 3174.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 3160.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 3151.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 3124.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 3121.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 3120.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 3103.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 3101.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 3094.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 3091.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 3085.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 3071.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3032.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 3017.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 3006.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 2999.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 2977.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 2972.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 2945.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 2941.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 2936.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 2920.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 2885.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 2878.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 2859.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 2852.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 2847.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 2841.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 2831.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 2819.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 2812.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 2812.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2809.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 2799.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2787.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 2780.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2761.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 2754.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2721.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 2716.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 2692.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 2675.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 2656.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 2649.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 2642.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 2639.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 2608.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 2605.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2599.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2574.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2570.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 2558.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 2551.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 2545.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 2504.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 2462.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 2455.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2433.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 2401.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 2395.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 2391.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 2389.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 2375.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 2374.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2366.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 2330.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 2315.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 2300.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 2285.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 2256.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 2253.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 2249.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 2241.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 2230.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 2220.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 2211.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2195.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2173.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 2170.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2156.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 2149.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 2143.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 2140.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 2132.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 2128.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2124.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2110.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 2094.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 2092.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 2036.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2030.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1996.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1970.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1959.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1958.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1955.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1951.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1895.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1888.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1850.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1839.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1829.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1814.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1798.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1789.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1759.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1738.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1703.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1670.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1634.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1627.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1616.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1611.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1569.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1534.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1516.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1505.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1500.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1489.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1478.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1468.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1434.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1417.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 1415.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1396.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1366.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1315.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1240.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1161.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1004.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 948.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 947.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

917.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 917.3
FF:10151-102I7 76 years, female 917.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.2
69816996 Antisense, RP_050510_02_D07, Mouse strain C57BL/6J (56 days, male) 21.3
73521810 Antisense, RP_051101_03_A09, Mouse strain C57BL/6J (56 days, male) 19.1

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