BETA
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1879.7 nTPM
HPA Brain:1318.3 nTPM
GTEx:1879.7 nTPM
FANTOM5:762.1 Scaled Tags Per Million
Macaque:181.8 nTPM
Mouse:0.4 nTPM
Rat:2.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity 86922
Sample Intensity
Hippocampal formation_01
 82364
Hippocampal formation_02
 48638
Hippocampal formation_03
 52516
Hippocampal formation_04
 136207
Hippocampal formation_05
 91479
Hippocampal formation_06
 196326

HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 1318.3
Sample id Sample description nTPM
Dentate gyrus
nTPM: 695.8
2246 Female, age 85, both hemispheres 914.9
2531 Female, age 67, both hemispheres 829.0
2530 Female, age 94, left hemisphere 781.9
2010 Male, age 76, both hemispheres 625.5
1927 Female, age 91, both hemispheres 566.3
2528 Male, age 74, both hemispheres 457.5
Entorhinal gyrus
nTPM: 932.1
1938 Female, age 85, left hemisphere 1258.3
2764 Male, age 80, right hemisphere 1180.4
1787 Male, age 76, left hemisphere 987.5
2613 Female, age 94, left hemisphere 854.6
2686 Male, age 75, right hemisphere 753.9
2117 Female, age 91, right hemisphere 558.1
Hippocampus, CA1
nTPM: 737.9
2045 Male, age 76, both hemispheres 943.6
2749 Male, age 80, left hemisphere 762.3
2082 Female, age 91, right hemisphere 715.3
2527 Male, age 74, both hemispheres 668.0
1873 Female, age 85, both hemispheres 600.2
Hippocampus, CA2
nTPM: 689.8
1940 Female, age 85, left hemisphere 876.3
2437 Female, age 94, left hemisphere 842.0
1892 Male, age 76, both hemispheres 820.0
2113 Female, age 91, right hemisphere 617.9
2249 Male, age 74, both hemispheres 514.3
1963 Male, age 80, left hemisphere 468.0
Hippocampus, CA3
nTPM: 765.5
1867 Male, age 76, both hemispheres 919.7
2137 Male, age 80, left hemisphere 816.1
2861 Female, age 67, both hemispheres 794.3
2620 Female, age 94, left hemisphere 774.5
1891 Female, age 85, both hemispheres 699.0
2436 Male, age 74, both hemispheres 589.5
Parahippocampal cortex
nTPM: 1007.9
2532 Female, age 72, left hemisphere 1434.2
1933 Female, age 85, both hemispheres 1416.6
1850 Male, age 80, both hemispheres 1283.1
2245 Female, age 91, both hemispheres 1022.7
2018 Male, age 76, both hemispheres 1018.2
2250 Female, age 67, right hemisphere 952.3
1990 Female, age 91, right hemisphere 838.6
2693 Female, age 94, both hemispheres 754.7
2622 Female, age 67, right hemisphere 754.4
2692 Male, age 74, both hemispheres 604.2
Perirhinal gyrus
nTPM: 1318.3
1847 Female, age 91, left hemisphere 1486.5
1794 Male, age 80, right hemisphere 1449.9
1841 Female, age 85, right hemisphere 1448.5
2521 Female, age 94, right hemisphere 1189.9
2848 Male, age 76, right hemisphere 1016.7
Subiculum
nTPM: 758.7
1977 Female, age 85, both hemispheres 1135.7
2438 Female, age 94, left hemisphere 842.4
2619 Male, age 74, both hemispheres 700.5
2042 Male, age 76, both hemispheres 690.6
1901 Male, age 80, both hemispheres 690.0
2729 Female, age 91, right hemisphere 493.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 1879.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1879.7
Samples: 255

Max nTPM: 7637.5
Min nTPM: 598.5
Std nTPM: 881.0
Median nTPM: 1711.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 7637.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 5313.0
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 5029.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 4307.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 4075.4
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 3993.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 3982.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 3952.1
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 3916.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 3906.3
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 3838.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 762.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 762.1
FF:10169-103B7 60 years, female 895.2
FF:10153-102I9 76 years, female 629.0

HIPPOCAMPAL FORMATION - Macaque RNA-seq
Max subtype nTPMi 181.8
Macaque sample Sample description nTPM
Subiculum
nTPM: 54.1
Samples: 1

Max nTPM: 54.1
Min nTPM: 54.1
Sample A 54.1
Entorhinal cortex
nTPM: 181.8
Samples: 2

Max nTPM: 192.8
Min nTPM: 170.8
Sample A 170.8
Sample B 192.8
Hippocampal formation
nTPM: 89.9
Samples: 4

Max nTPM: 121.2
Min nTPM: 59.7
Sample A 59.7
Sample B 61.8
Sample C 117.0
Sample D 121.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 0.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.3
Sample A 0.4
Sample B 0.5
Sample C 0.4
Sample D 0.3
Hippocampal formation
nTPM: 0.4
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.1
Sample A 0.3
Sample B 0.3
Sample C 0.1
Sample D 0.7

HIPPOCAMPAL FORMATION - Rat RNA-seq
Max subtype nTPMi 2.9
Rat sample Sample description nTPM
Entorhinal cortex
nTPM: 2.9
Samples: 4

Max nTPM: 4.3
Min nTPM: 1.6
Sample A 1.6
Sample A 3.3
Sample A 2.3
Sample B 4.3
Ventral hippocampus
nTPM: 1.3
Samples: 4

Max nTPM: 3.0
Min nTPM: 0.0
Sample A 0.6
Sample A 0.0
Sample A 3.0
Sample A 1.5

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