A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.3
nTPM
Monaco:
37.3
nTPM
Schmiedel:
24.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.3
HPA sample
nTPM
Memory B-cell nTPM: 23.3
Samples: 6
Max nTPM: 39.2
Min nTPM: 17.1
P10809_1017
19.5
P10809_1025
20.6
P10809_1044
39.2
P10809_1063
20.4
P10809_1092
23.1
P10809_1105
17.1
Naive B-cell nTPM: 18.7
Samples: 6
Max nTPM: 24.6
Min nTPM: 12.0
P10809_1011
12.0
P10809_1029
17.1
P10809_1048
17.7
P10809_1067
22.8
P10809_1091
24.6
P10809_1104
18.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 34.4
Samples: 4
Max nTPM: 40.1
Min nTPM: 29.7
RHH5310_R3677
29.7
RHH5218_R3590
35.5
RHH5247_R3619
40.1
RHH5276_R3648
32.4
Naive B-cell nTPM: 25.7
Samples: 4
Max nTPM: 27.3
Min nTPM: 23.9
RHH5308_R3675
27.1
RHH5216_R3588
24.7
RHH5245_R3617
23.9
RHH5274_R3646
27.3
Non-switched memory B-cell nTPM: 37.3
Samples: 4
Max nTPM: 44.0
Min nTPM: 32.1
RHH5309_R3676
38.8
RHH5217_R3589
34.2
RHH5246_R3618
32.1
RHH5275_R3647
44.0
Plasmablast nTPM: 35.0
Samples: 4
Max nTPM: 40.3
Min nTPM: 32.1
RHH5312_R3679
33.3
RHH5220_R3592
34.2
RHH5249_R3621
40.3
RHH5278_R3650
32.1
Switched memory B-cell nTPM: 33.1
Samples: 4
Max nTPM: 36.5
Min nTPM: 29.6
RHH5311_R3678
29.6
RHH5219_R3591
35.4
RHH5248_R3620
36.5
RHH5277_R3649
30.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.2
Schmiedel sample id
TPM
Naive B-cell TPM: 24.3
Samples: 91
Max TPM: 37.5
Min TPM: 13.9
B_CELL_NAIVE_1
37.5
B_CELL_NAIVE_2
35.7
B_CELL_NAIVE_3
34.4
B_CELL_NAIVE_4
34.3
B_CELL_NAIVE_5
33.9
B_CELL_NAIVE_6
33.7
B_CELL_NAIVE_7
33.3
B_CELL_NAIVE_8
32.4
B_CELL_NAIVE_9
32.1
B_CELL_NAIVE_10
32.0
B_CELL_NAIVE_11
31.8
B_CELL_NAIVE_12
30.7
B_CELL_NAIVE_13
30.3
B_CELL_NAIVE_14
30.1
B_CELL_NAIVE_15
29.4
B_CELL_NAIVE_16
29.3
B_CELL_NAIVE_17
29.2
B_CELL_NAIVE_18
28.9
B_CELL_NAIVE_19
28.6
B_CELL_NAIVE_20
28.3
B_CELL_NAIVE_21
28.3
B_CELL_NAIVE_22
27.6
B_CELL_NAIVE_23
27.6
B_CELL_NAIVE_24
27.5
B_CELL_NAIVE_25
27.0
B_CELL_NAIVE_26
26.8
B_CELL_NAIVE_27
26.7
B_CELL_NAIVE_28
26.5
B_CELL_NAIVE_29
26.5
B_CELL_NAIVE_30
26.5
B_CELL_NAIVE_31
26.3
B_CELL_NAIVE_32
26.0
B_CELL_NAIVE_33
25.9
B_CELL_NAIVE_34
25.4
B_CELL_NAIVE_35
25.3
B_CELL_NAIVE_36
25.2
B_CELL_NAIVE_37
24.8
B_CELL_NAIVE_38
24.8
B_CELL_NAIVE_39
24.7
B_CELL_NAIVE_40
24.7
B_CELL_NAIVE_41
24.7
B_CELL_NAIVE_42
24.4
B_CELL_NAIVE_43
24.1
B_CELL_NAIVE_44
23.9
B_CELL_NAIVE_45
23.8
B_CELL_NAIVE_46
23.8
B_CELL_NAIVE_47
23.7
B_CELL_NAIVE_48
23.6
B_CELL_NAIVE_49
23.3
B_CELL_NAIVE_50
23.2
B_CELL_NAIVE_51
22.9
B_CELL_NAIVE_52
22.8
B_CELL_NAIVE_53
22.7
B_CELL_NAIVE_54
22.4
B_CELL_NAIVE_55
22.3
B_CELL_NAIVE_56
22.3
B_CELL_NAIVE_57
22.0
B_CELL_NAIVE_58
22.0
B_CELL_NAIVE_59
21.9
B_CELL_NAIVE_60
21.7
B_CELL_NAIVE_61
21.5
B_CELL_NAIVE_62
21.4
B_CELL_NAIVE_63
21.1
B_CELL_NAIVE_64
21.0
B_CELL_NAIVE_65
20.8
B_CELL_NAIVE_66
20.8
B_CELL_NAIVE_67
20.7
B_CELL_NAIVE_68
20.6
B_CELL_NAIVE_69
20.4
B_CELL_NAIVE_70
20.4
B_CELL_NAIVE_71
20.4
B_CELL_NAIVE_72
20.2
B_CELL_NAIVE_73
19.8
B_CELL_NAIVE_74
19.2
B_CELL_NAIVE_75
19.1
B_CELL_NAIVE_76
19.1
B_CELL_NAIVE_77
18.8
B_CELL_NAIVE_78
18.6
B_CELL_NAIVE_79
18.5
B_CELL_NAIVE_80
18.3
B_CELL_NAIVE_81
18.3
B_CELL_NAIVE_82
18.2
B_CELL_NAIVE_83
18.2
B_CELL_NAIVE_84
17.8
B_CELL_NAIVE_85
17.5
B_CELL_NAIVE_86
17.0
B_CELL_NAIVE_87
16.7
B_CELL_NAIVE_88
16.7
B_CELL_NAIVE_89
15.5
B_CELL_NAIVE_90
14.9
B_CELL_NAIVE_91
13.9
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The Human Protein Atlas project is funded
