A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.1
nTPM
Monaco:
47.2
nTPM
Schmiedel:
36.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.1
HPA sample
nTPM
Classical monocyte nTPM: 7.1
Samples: 6
Max nTPM: 9.6
Min nTPM: 5.5
P10809_1003
7.7
P10809_1020
7.9
P10809_1039
9.6
P10809_1058
5.5
P10809_1080
5.7
P10809_1107
6.1
Intermediate monocyte nTPM: 5.0
Samples: 6
Max nTPM: 8.1
Min nTPM: 1.3
P10809_1004
8.1
P10809_1023
1.3
P10809_1042
7.9
P10809_1061
4.6
P10809_1081
4.0
P10809_1108
4.2
Non-classical monocyte nTPM: 3.5
Samples: 5
Max nTPM: 8.4
Min nTPM: 0.0
P10809_1005
8.4
P10809_1053
3.3
P10809_1072
0.0
P10809_1082
3.3
P10809_1109
2.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.2
Monaco sample
nTPM
Classical monocyte nTPM: 47.2
Samples: 4
Max nTPM: 57.5
Min nTPM: 36.6
RHH5313_R3680
36.6
RHH5221_R3593
57.5
RHH5250_R3622
51.3
RHH5279_R3651
43.3
Intermediate monocyte nTPM: 34.7
Samples: 4
Max nTPM: 44.8
Min nTPM: 29.5
RHH5314_R3681
33.0
RHH5222_R3594
44.8
RHH5251_R3623
29.5
RHH5280_R3652
31.4
Non-classical monocyte nTPM: 32.2
Samples: 4
Max nTPM: 42.4
Min nTPM: 22.8
RHH5315_R3682
31.3
RHH5223_R3595
32.4
RHH5252_R3624
42.4
RHH5281_R3653
22.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.8
Schmiedel sample id
TPM
Classical monocyte TPM: 36.8
Samples: 91
Max TPM: 51.1
Min TPM: 24.6
MONOCYTES_1
51.1
MONOCYTES_2
47.1
MONOCYTES_3
46.8
MONOCYTES_4
46.6
MONOCYTES_5
46.6
MONOCYTES_6
44.4
MONOCYTES_7
44.2
MONOCYTES_8
44.2
MONOCYTES_9
43.8
MONOCYTES_10
43.7
MONOCYTES_11
43.2
MONOCYTES_12
42.5
MONOCYTES_13
42.4
MONOCYTES_14
41.9
MONOCYTES_15
41.8
MONOCYTES_16
41.8
MONOCYTES_17
41.6
MONOCYTES_18
41.3
MONOCYTES_19
41.2
MONOCYTES_20
40.9
MONOCYTES_21
40.7
MONOCYTES_22
40.5
MONOCYTES_23
40.4
MONOCYTES_24
40.4
MONOCYTES_25
40.2
MONOCYTES_26
40.0
MONOCYTES_27
39.8
MONOCYTES_28
39.8
MONOCYTES_29
39.6
MONOCYTES_30
39.0
MONOCYTES_31
38.8
MONOCYTES_32
38.5
MONOCYTES_33
38.4
MONOCYTES_34
38.2
MONOCYTES_35
37.8
MONOCYTES_36
37.8
MONOCYTES_37
37.5
MONOCYTES_38
37.3
MONOCYTES_39
37.3
MONOCYTES_40
37.2
MONOCYTES_41
36.5
MONOCYTES_42
36.5
MONOCYTES_43
36.4
MONOCYTES_44
36.3
MONOCYTES_45
35.7
MONOCYTES_46
35.5
MONOCYTES_47
35.4
MONOCYTES_48
35.4
MONOCYTES_49
35.3
MONOCYTES_50
35.2
MONOCYTES_51
35.1
MONOCYTES_52
35.1
MONOCYTES_53
35.0
MONOCYTES_54
35.0
MONOCYTES_55
35.0
MONOCYTES_56
34.8
MONOCYTES_57
34.8
MONOCYTES_58
34.2
MONOCYTES_59
34.2
MONOCYTES_60
34.1
MONOCYTES_61
34.1
MONOCYTES_62
34.0
MONOCYTES_63
33.9
MONOCYTES_64
33.9
MONOCYTES_65
33.9
MONOCYTES_66
33.8
MONOCYTES_67
33.6
MONOCYTES_68
33.3
MONOCYTES_69
33.2
MONOCYTES_70
33.1
MONOCYTES_71
33.0
MONOCYTES_72
33.0
MONOCYTES_73
32.9
MONOCYTES_74
32.6
MONOCYTES_75
32.5
MONOCYTES_76
32.4
MONOCYTES_77
32.4
MONOCYTES_78
32.2
MONOCYTES_79
32.2
MONOCYTES_80
32.0
MONOCYTES_81
31.7
MONOCYTES_82
31.0
MONOCYTES_83
30.7
MONOCYTES_84
30.3
MONOCYTES_85
30.2
MONOCYTES_86
29.9
MONOCYTES_87
29.8
MONOCYTES_88
29.6
MONOCYTES_89
29.3
MONOCYTES_90
29.2
MONOCYTES_91
24.6
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Non-classical monocyte TPM: 31.4
Samples: 90
Max TPM: 43.8
Min TPM: 18.3
M2_1
43.8
M2_2
42.7
M2_3
42.6
M2_4
41.5
M2_5
41.3
M2_6
39.9
M2_7
39.8
M2_8
39.7
M2_9
39.6
M2_10
39.4
M2_11
39.3
M2_12
38.8
M2_13
37.8
M2_14
37.7
M2_15
37.5
M2_16
37.2
M2_17
36.8
M2_18
35.6
M2_19
35.2
M2_20
35.2
M2_21
35.1
M2_22
35.0
M2_23
34.7
M2_24
34.3
M2_25
34.0
M2_26
33.5
M2_27
33.0
M2_28
33.0
M2_29
32.9
M2_30
32.8
M2_31
32.6
M2_32
32.3
M2_33
32.2
M2_34
32.2
M2_35
31.9
M2_36
31.7
M2_37
31.7
M2_38
31.7
M2_39
31.6
M2_40
31.6
M2_41
31.5
M2_42
31.4
M2_43
31.3
M2_44
31.2
M2_45
31.1
M2_46
30.8
M2_47
30.7
M2_48
30.6
M2_49
30.5
M2_50
30.2
M2_51
29.9
M2_52
29.8
M2_53
29.8
M2_54
29.7
M2_55
29.4
M2_56
28.9
M2_57
28.9
M2_58
28.8
M2_59
28.5
M2_60
28.3
M2_61
28.1
M2_62
28.1
M2_63
28.1
M2_64
27.8
M2_65
27.8
M2_66
27.7
M2_67
27.3
M2_68
27.3
M2_69
27.3
M2_70
27.2
M2_71
27.2
M2_72
27.1
M2_73
26.7
M2_74
26.7
M2_75
26.6
M2_76
26.6
M2_77
26.2
M2_78
26.1
M2_79
26.0
M2_80
25.9
M2_81
25.9
M2_82
25.9
M2_83
25.7
M2_84
25.7
M2_85
25.1
M2_86
24.4
M2_87
24.1
M2_88
22.8
M2_89
21.8
M2_90
18.3
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