A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.1
nTPM
Monaco:
18.2
nTPM
Schmiedel:
102.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.1
HPA sample
nTPM
Classical monocyte nTPM: 5.1
Samples: 6
Max nTPM: 7.1
Min nTPM: 3.0
P10809_1003
3.0
P10809_1020
4.0
P10809_1039
6.2
P10809_1058
7.1
P10809_1080
4.3
P10809_1107
6.1
Intermediate monocyte nTPM: 3.7
Samples: 6
Max nTPM: 4.6
Min nTPM: 2.7
P10809_1004
3.2
P10809_1023
3.4
P10809_1042
2.7
P10809_1061
3.6
P10809_1081
4.5
P10809_1108
4.6
Non-classical monocyte nTPM: 4.4
Samples: 5
Max nTPM: 7.3
Min nTPM: 2.8
P10809_1005
2.8
P10809_1053
3.7
P10809_1072
7.3
P10809_1082
4.0
P10809_1109
4.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.2
Monaco sample
nTPM
Classical monocyte nTPM: 17.0
Samples: 4
Max nTPM: 22.5
Min nTPM: 11.9
RHH5313_R3680
19.4
RHH5221_R3593
11.9
RHH5250_R3622
14.4
RHH5279_R3651
22.5
Intermediate monocyte nTPM: 18.2
Samples: 4
Max nTPM: 30.5
Min nTPM: 8.6
RHH5314_R3681
8.6
RHH5222_R3594
10.9
RHH5251_R3623
30.5
RHH5280_R3652
22.7
Non-classical monocyte nTPM: 7.8
Samples: 4
Max nTPM: 12.6
Min nTPM: 2.6
RHH5315_R3682
7.4
RHH5223_R3595
2.6
RHH5252_R3624
8.4
RHH5281_R3653
12.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
102.5
Schmiedel sample id
TPM
Classical monocyte TPM: 102.5
Samples: 91
Max TPM: 136.3
Min TPM: 72.4
MONOCYTES_1
136.3
MONOCYTES_2
127.9
MONOCYTES_3
125.8
MONOCYTES_4
125.0
MONOCYTES_5
123.2
MONOCYTES_6
122.8
MONOCYTES_7
121.6
MONOCYTES_8
119.7
MONOCYTES_9
117.6
MONOCYTES_10
116.7
MONOCYTES_11
116.3
MONOCYTES_12
115.9
MONOCYTES_13
115.9
MONOCYTES_14
115.3
MONOCYTES_15
114.9
MONOCYTES_16
113.6
MONOCYTES_17
112.7
MONOCYTES_18
112.4
MONOCYTES_19
111.8
MONOCYTES_20
111.8
MONOCYTES_21
111.4
MONOCYTES_22
110.9
MONOCYTES_23
110.7
MONOCYTES_24
110.6
MONOCYTES_25
110.6
MONOCYTES_26
110.0
MONOCYTES_27
109.9
MONOCYTES_28
109.3
MONOCYTES_29
108.9
MONOCYTES_30
108.4
MONOCYTES_31
108.3
MONOCYTES_32
108.0
MONOCYTES_33
108.0
MONOCYTES_34
108.0
MONOCYTES_35
107.9
MONOCYTES_36
107.8
MONOCYTES_37
107.5
MONOCYTES_38
106.7
MONOCYTES_39
106.3
MONOCYTES_40
106.3
MONOCYTES_41
105.9
MONOCYTES_42
105.2
MONOCYTES_43
105.0
MONOCYTES_44
103.9
MONOCYTES_45
103.9
MONOCYTES_46
103.8
MONOCYTES_47
103.7
MONOCYTES_48
102.6
MONOCYTES_49
102.2
MONOCYTES_50
101.5
MONOCYTES_51
101.2
MONOCYTES_52
100.8
MONOCYTES_53
100.7
MONOCYTES_54
99.5
MONOCYTES_55
98.8
MONOCYTES_56
98.1
MONOCYTES_57
97.2
MONOCYTES_58
97.0
MONOCYTES_59
96.9
MONOCYTES_60
96.5
MONOCYTES_61
96.0
MONOCYTES_62
95.7
MONOCYTES_63
95.5
MONOCYTES_64
94.4
MONOCYTES_65
93.8
MONOCYTES_66
93.7
MONOCYTES_67
93.4
MONOCYTES_68
93.1
MONOCYTES_69
92.9
MONOCYTES_70
92.8
MONOCYTES_71
92.5
MONOCYTES_72
92.1
MONOCYTES_73
91.4
MONOCYTES_74
90.6
MONOCYTES_75
89.9
MONOCYTES_76
89.5
MONOCYTES_77
88.6
MONOCYTES_78
88.5
MONOCYTES_79
88.1
MONOCYTES_80
87.9
MONOCYTES_81
87.7
MONOCYTES_82
86.6
MONOCYTES_83
85.9
MONOCYTES_84
84.3
MONOCYTES_85
84.0
MONOCYTES_86
83.9
MONOCYTES_87
83.2
MONOCYTES_88
82.6
MONOCYTES_89
81.8
MONOCYTES_90
75.7
MONOCYTES_91
72.4
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Non-classical monocyte TPM: 80.2
Samples: 90
Max TPM: 101.6
Min TPM: 57.6
M2_1
101.6
M2_2
95.4
M2_3
95.1
M2_4
93.7
M2_5
93.3
M2_6
91.8
M2_7
90.4
M2_8
90.2
M2_9
89.7
M2_10
89.2
M2_11
89.2
M2_12
88.7
M2_13
88.4
M2_14
88.3
M2_15
88.1
M2_16
88.0
M2_17
87.8
M2_18
87.6
M2_19
87.0
M2_20
86.7
M2_21
86.7
M2_22
85.8
M2_23
85.2
M2_24
84.6
M2_25
84.6
M2_26
84.2
M2_27
84.1
M2_28
83.9
M2_29
83.6
M2_30
83.5
M2_31
82.8
M2_32
82.8
M2_33
82.6
M2_34
82.5
M2_35
82.2
M2_36
81.8
M2_37
81.6
M2_38
81.5
M2_39
81.4
M2_40
80.5
M2_41
80.5
M2_42
80.5
M2_43
80.5
M2_44
80.4
M2_45
80.4
M2_46
80.3
M2_47
80.1
M2_48
79.7
M2_49
79.5
M2_50
79.5
M2_51
79.3
M2_52
79.2
M2_53
78.4
M2_54
78.2
M2_55
77.8
M2_56
77.7
M2_57
77.6
M2_58
77.5
M2_59
77.3
M2_60
77.2
M2_61
77.2
M2_62
76.9
M2_63
76.8
M2_64
76.7
M2_65
76.5
M2_66
75.8
M2_67
75.1
M2_68
74.9
M2_69
74.9
M2_70
74.4
M2_71
74.4
M2_72
74.3
M2_73
74.2
M2_74
74.0
M2_75
73.5
M2_76
73.3
M2_77
72.8
M2_78
72.8
M2_79
72.3
M2_80
71.6
M2_81
70.9
M2_82
70.9
M2_83
70.0
M2_84
69.6
M2_85
68.3
M2_86
68.1
M2_87
67.5
M2_88
66.6
M2_89
59.9
M2_90
57.6
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