MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:105.9 nTPM
HPA Brain:307.5 nTPM
GTEx:105.9 nTPM
FANTOM5:366.6 Scaled Tags Per Million
Pig:251.4 nTPM
Mouse:232.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 307.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 222.3
1827 Male, age 72, unknown 263.8
1870 Female, age 42, unknown 257.9
2666 Male, age 74, left hemisphere 243.8
2828 Female, age 72, unknown 243.1
2411 Female, age 72, unknown 234.0
1830 Male, age 51, unknown 222.2
1833 Male, age 53, unknown 221.3
2586 Male, age 75, left hemisphere 202.0
2019 Male, age 18, unknown 176.5
2219 Male, age 76, both hemispheres 158.7
Dorsal raphe nucleus
nTPM: 224.9
2750 Male, age 76, both hemispheres 279.1
2298 Female, age 72, unknown 246.1
2047 Male, age 72, unknown 220.4
1828 Male, age 53, unknown 196.4
2016 Female, age 72, unknown 182.6
Inferior colliculus
nTPM: 188.0
1848 Female, age 42, unknown 245.9
2849 Male, age 72, unknown 207.4
2097 Female, age 72, unknown 158.6
1890 Male, age 53, unknown 140.3
Median raphe nucleus
nTPM: 307.5
2220 Male, age 76, midline 307.5
Periaquaductal grey, anterior
nTPM: 266.3
1947 Male, age 18, unknown 301.9
2502 Female, age 75, unknown 250.3
1795 Male, age 51, unknown 246.7
Periaquaductal grey, dorsal
nTPM: 211.4
1840 Male, age 53, unknown 228.1
1831 Male, age 72, unknown 216.3
2850 Male, age 76, both hemispheres 207.3
2464 Female, age 72, unknown 193.8
Periaquaductal grey, lateral
nTPM: 214.2
2053 Male, age 18, unknown 249.4
2140 Male, age 76, both hemispheres 210.6
2272 Male, age 74, both hemispheres 182.4
Pretectal area
nTPM: 228.1
1816 Male, age 51, unknown 273.0
2825 Male, age 18, unknown 256.7
1815 Male, age 53, unknown 245.6
2316 Male, age 76, right hemisphere 238.8
2224 Female, age 72, unknown 235.2
1817 Female, age 42, unknown 234.7
1944 Female, age 72, unknown 230.5
2667 Female, age 75, unknown 208.8
2007 Male, age 72, unknown 205.9
2407 Male, age 75, both hemispheres 200.9
2273 Male, age 74, both hemispheres 179.1
Red nucleus
nTPM: 213.2
2584 Male, age 75, left hemisphere 247.7
1821 Female, age 72, unknown 238.8
1904 Male, age 53, unknown 228.9
1865 Male, age 51, unknown 212.5
2503 Female, age 72, unknown 210.0
2769 Male, age 72, unknown 209.9
2823 Male, age 76, right hemisphere 209.1
2588 Male, age 74, left hemisphere 208.0
2227 Male, age 72, unknown 206.9
1954 Female, age 42, unknown 203.8
2725 Female, age 75, unknown 195.1
2785 Male, age 18, unknown 188.0
Substantia nigra
nTPM: 191.3
2590 Female, age 75, unknown 260.4
1889 Female, age 72, unknown 221.2
2583 Male, age 75, right hemisphere 220.7
1941 Male, age 53, unknown 215.6
2665 Male, age 74, both hemispheres 193.3
2409 Female, age 72, unknown 178.2
1851 Male, age 51, unknown 171.9
2241 Male, age 72, unknown 164.0
1916 Female, age 42, unknown 145.5
2699 Male, age 18, unknown 141.8
Superior colliculus
nTPM: 234.9
2261 Male, age 18, unknown 288.1
1796 Male, age 53, unknown 245.9
1913 Female, age 42, unknown 240.1
1895 Male, age 76, right hemisphere 239.2
2087 Female, age 72, unknown 230.9
1839 Male, age 51, unknown 226.6
1995 Male, age 72, unknown 222.9
2664 Male, age 75, both hemispheres 222.7
2587 Male, age 74, left hemisphere 220.8
2668 Female, age 75, unknown 211.7
Ventral tegmental area
nTPM: 225.9
2223 Female, age 72, unknown 254.4
2218 Male, age 76, both hemispheres 234.7
1942 Male, age 51, unknown 224.7
2410 Female, age 72, unknown 218.1
2021 Male, age 53, unknown 217.8
1915 Female, age 42, unknown 205.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 105.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 105.9
Samples: 183

Max nTPM: 226.4
Min nTPM: 43.2
Std nTPM: 31.5
Median nTPM: 102.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 226.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 208.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 202.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 202.4
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 188.2
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 181.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 173.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 166.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 166.3
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 165.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 165.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 366.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 366.6
FF:10158-103A5 76 years, female 366.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 251.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 251.3
Samples: 4

Max nTPM: 304.5
Min nTPM: 186.3
Sample A Female 291.3
Sample B Female 223.2
Sample C Male 304.5
Sample D Male 186.3
Midbrain
nTPM: 232.7
Samples: 4

Max nTPM: 345.1
Min nTPM: 178.7
Sample A Female 178.7
Sample B Female 189.7
Sample C Male 345.1
Sample D Male 217.4
Periaqueductal gray
nTPM: 176.1
Samples: 3

Max nTPM: 201.8
Min nTPM: 154.1
Sample B Female 172.4
Sample C Male 201.8
Sample D Male 154.1
Superior colliculi
nTPM: 239.0
Samples: 4

Max nTPM: 260.6
Min nTPM: 212.6
Sample A Female 231.0
Sample B Female 212.6
Sample C Male 260.6
Sample D Male 251.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 232.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 232.5
Samples: 4

Max nTPM: 249.0
Min nTPM: 215.4
Sample A Male 215.4
Sample B Male 241.3
Sample C Female 249.0
Sample D Female 224.2

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