A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.8
nTPM
Monaco:
58.8
nTPM
Schmiedel:
53.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.8
HPA sample
nTPM
Memory B-cell nTPM: 14.7
Samples: 6
Max nTPM: 35.5
Min nTPM: 7.4
P10809_1017
9.4
P10809_1025
7.4
P10809_1044
35.5
P10809_1063
18.5
P10809_1092
8.3
P10809_1105
8.9
Naive B-cell nTPM: 15.8
Samples: 6
Max nTPM: 22.3
Min nTPM: 12.2
P10809_1011
12.2
P10809_1029
12.3
P10809_1048
14.6
P10809_1067
22.3
P10809_1091
19.3
P10809_1104
14.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 29.6
Samples: 4
Max nTPM: 39.5
Min nTPM: 23.1
RHH5310_R3677
29.2
RHH5218_R3590
39.5
RHH5247_R3619
23.1
RHH5276_R3648
26.7
Naive B-cell nTPM: 26.6
Samples: 4
Max nTPM: 30.8
Min nTPM: 19.3
RHH5308_R3675
26.0
RHH5216_R3588
30.4
RHH5245_R3617
30.8
RHH5274_R3646
19.3
Non-switched memory B-cell nTPM: 28.4
Samples: 4
Max nTPM: 35.6
Min nTPM: 13.2
RHH5309_R3676
35.6
RHH5217_R3589
34.8
RHH5246_R3618
29.9
RHH5275_R3647
13.2
Plasmablast nTPM: 58.8
Samples: 4
Max nTPM: 80.2
Min nTPM: 45.4
RHH5312_R3679
80.2
RHH5220_R3592
61.9
RHH5249_R3621
45.4
RHH5278_R3650
47.7
Switched memory B-cell nTPM: 22.1
Samples: 4
Max nTPM: 29.0
Min nTPM: 13.5
RHH5311_R3678
29.0
RHH5219_R3591
23.5
RHH5248_R3620
13.5
RHH5277_R3649
22.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.8
Schmiedel sample id
TPM
Naive B-cell TPM: 53.8
Samples: 91
Max TPM: 79.6
Min TPM: 37.5
B_CELL_NAIVE_1
79.6
B_CELL_NAIVE_2
73.6
B_CELL_NAIVE_3
72.9
B_CELL_NAIVE_4
72.5
B_CELL_NAIVE_5
67.9
B_CELL_NAIVE_6
67.4
B_CELL_NAIVE_7
66.8
B_CELL_NAIVE_8
65.4
B_CELL_NAIVE_9
63.3
B_CELL_NAIVE_10
61.3
B_CELL_NAIVE_11
61.3
B_CELL_NAIVE_12
61.1
B_CELL_NAIVE_13
60.8
B_CELL_NAIVE_14
60.2
B_CELL_NAIVE_15
60.1
B_CELL_NAIVE_16
60.1
B_CELL_NAIVE_17
59.9
B_CELL_NAIVE_18
59.8
B_CELL_NAIVE_19
59.3
B_CELL_NAIVE_20
59.2
B_CELL_NAIVE_21
59.2
B_CELL_NAIVE_22
58.9
B_CELL_NAIVE_23
58.2
B_CELL_NAIVE_24
57.7
B_CELL_NAIVE_25
57.2
B_CELL_NAIVE_26
57.0
B_CELL_NAIVE_27
56.9
B_CELL_NAIVE_28
56.9
B_CELL_NAIVE_29
56.7
B_CELL_NAIVE_30
56.4
B_CELL_NAIVE_31
56.0
B_CELL_NAIVE_32
55.9
B_CELL_NAIVE_33
55.9
B_CELL_NAIVE_34
55.4
B_CELL_NAIVE_35
53.6
B_CELL_NAIVE_36
53.6
B_CELL_NAIVE_37
53.5
B_CELL_NAIVE_38
53.5
B_CELL_NAIVE_39
53.2
B_CELL_NAIVE_40
53.1
B_CELL_NAIVE_41
52.9
B_CELL_NAIVE_42
52.8
B_CELL_NAIVE_43
52.8
B_CELL_NAIVE_44
52.7
B_CELL_NAIVE_45
52.6
B_CELL_NAIVE_46
52.4
B_CELL_NAIVE_47
52.3
B_CELL_NAIVE_48
52.1
B_CELL_NAIVE_49
52.1
B_CELL_NAIVE_50
51.8
B_CELL_NAIVE_51
51.7
B_CELL_NAIVE_52
51.6
B_CELL_NAIVE_53
51.2
B_CELL_NAIVE_54
50.9
B_CELL_NAIVE_55
50.8
B_CELL_NAIVE_56
50.7
B_CELL_NAIVE_57
50.7
B_CELL_NAIVE_58
50.5
B_CELL_NAIVE_59
50.4
B_CELL_NAIVE_60
50.2
B_CELL_NAIVE_61
50.0
B_CELL_NAIVE_62
49.9
B_CELL_NAIVE_63
49.9
B_CELL_NAIVE_64
49.9
B_CELL_NAIVE_65
49.9
B_CELL_NAIVE_66
49.8
B_CELL_NAIVE_67
49.6
B_CELL_NAIVE_68
49.4
B_CELL_NAIVE_69
49.4
B_CELL_NAIVE_70
49.3
B_CELL_NAIVE_71
48.9
B_CELL_NAIVE_72
48.7
B_CELL_NAIVE_73
48.2
B_CELL_NAIVE_74
48.2
B_CELL_NAIVE_75
47.6
B_CELL_NAIVE_76
47.6
B_CELL_NAIVE_77
47.6
B_CELL_NAIVE_78
47.4
B_CELL_NAIVE_79
47.2
B_CELL_NAIVE_80
46.5
B_CELL_NAIVE_81
46.3
B_CELL_NAIVE_82
46.2
B_CELL_NAIVE_83
45.6
B_CELL_NAIVE_84
45.6
B_CELL_NAIVE_85
45.0
B_CELL_NAIVE_86
44.4
B_CELL_NAIVE_87
43.7
B_CELL_NAIVE_88
41.7
B_CELL_NAIVE_89
41.2
B_CELL_NAIVE_90
40.1
B_CELL_NAIVE_91
37.5
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