We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
USP2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • USP2
TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:70.7 nTPM
GTEx:70.7 nTPM
FANTOM5:93.9 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 70.7
Samples: 105

Max nTPM: 113.4
Min nTPM: 27.4
Std nTPM: 19.8
Median nTPM:
319_1 81 years, male 113.4
394_1 75 years, female 112.1
286_1 68 years, female 108.7
237_1 82 years, male 107.2
335_1 73 years, female 105.8
163_1 78 years, male 104.5
356_1 87 years, female 102.8
293_1 68 years, female 101.5
218_1 71 years, female 101.3
172_1 72 years, female 100.3
350_1 84 years, female 99.5
229_1 69 years, female 98.0
354_1 81 years, female 97.1
376_1 75 years, female 96.2
353_1 82 years, female 95.1
352_1 62 years, male 94.8
379_1 60 years, male 94.5
320_1 89 years, female 92.1
349_1 83 years, male 90.7
292_1 71 years, male 90.6
316_1 62 years, male 90.6
355_1 70 years, female 90.6
375_1 74 years, female 90.1
321_1 62 years, female 89.6
377_1 82 years, female 88.4
425_1 59 years, female 88.1
389_1 86 years, female 87.1
386_1 76 years, male 82.0
177_1 74 years, male 81.2
251_1 78 years, male 80.9
404_1 82 years, female 80.9
447_1 81 years, male 80.8
246_1 77 years, male 80.4
318_1 68 years, male 80.3
217_1 76 years, male 79.9
243_1 75 years, male 79.6
266_1 85 years, male 78.7
503_1 68 years, male 78.5
396_1 62 years, male 77.2
499_1 55 years, female 77.2
322_1 76 years, male 76.8
480_1 63 years, male 76.3
518_1 75 years, female 75.0
468_1 89 years, male 72.7
311_1 78 years, male 71.8
348_1 84 years, male 71.7
347_1 72 years, male 70.9
265_1 87 years, male 70.5
35_1 74 years, female 70.0
189_1 76 years, male 69.7
506_1 65 years, male 69.7
517_1 88 years, male 69.5
406_1 79 years, male 69.0
324_1 76 years, male 68.7
405_1 91 years, male 68.1
126_1 63 years, male 68.0
153_1 70 years, female 66.4
2_1 77 years, female 65.7
295_1 61 years, female 65.6
313_1 79 years, female 64.9
452_1 88 years, female 64.8
384_1 83 years, male 64.6
526_1 61 years, male 64.2
413_1 59 years, female 63.7
291_1 76 years, male 63.2
264_1 73 years, female 62.1
414_1 84 years, female 61.5
6_1 73 years, female 60.6
351_1 91 years, male 59.8
81_1 67 years, male 58.2
466_1 57 years, female 58.2
4_1 88 years, female 58.0
117_1 61 years, male 57.9
9_1 66 years, female 57.7
142_1 61 years, female 57.1
173_1 67 years, male 56.6
162_1 79 years, female 56.4
145_1 84 years, male 56.2
109_1 81 years, female 56.1
99_1 64 years, male 55.6
307_1 66 years, female 55.3
115_1 83 years, male 55.1
254_1 77 years, female 54.9
18_1 88 years, male 54.8
42_1 85 years, male 54.8
415_1 77 years, female 54.8
315_1 62 years, female 52.9
317_1 60 years, male 52.3
43_1 64 years, female 51.2
17_1 71 years, male 50.6
32_1 67 years, male 50.3
139_1 64 years, female 49.0
137_1 83 years, male 48.9
288_1 66 years, female 48.2
314_1 67 years, male 46.4
120_1 70 years, female 45.0
501_1 88 years, male 44.9
149_1 88 years, male 41.4
119_1 70 years, female 41.1
495_1 57 years, female 39.5
490_1 67 years, female 39.4
41_1 94 years, female 39.1
89_1 63 years, male 31.2
491_1 89 years, female 30.1
308_1 70 years, female 27.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

93.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 93.9
FF:10030-101E3 24-65 years, mixed 93.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo