A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.4
nTPM
Monaco:
89.3
nTPM
Schmiedel:
70.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.4
HPA sample
nTPM
Classical monocyte nTPM: 18.6
Samples: 6
Max nTPM: 24.9
Min nTPM: 12.9
P10809_1003
20.6
P10809_1020
24.9
P10809_1039
21.4
P10809_1058
12.9
P10809_1080
16.0
P10809_1107
15.9
Intermediate monocyte nTPM: 22.4
Samples: 6
Max nTPM: 29.2
Min nTPM: 11.6
P10809_1004
23.0
P10809_1023
21.7
P10809_1042
29.2
P10809_1061
21.5
P10809_1081
11.6
P10809_1108
27.4
Non-classical monocyte nTPM: 21.2
Samples: 5
Max nTPM: 24.4
Min nTPM: 16.5
P10809_1005
19.8
P10809_1053
23.6
P10809_1072
24.4
P10809_1082
16.5
P10809_1109
21.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
89.3
Monaco sample
nTPM
Classical monocyte nTPM: 87.4
Samples: 4
Max nTPM: 102.3
Min nTPM: 77.1
RHH5313_R3680
77.1
RHH5221_R3593
102.3
RHH5250_R3622
81.5
RHH5279_R3651
88.5
Intermediate monocyte nTPM: 71.6
Samples: 4
Max nTPM: 91.5
Min nTPM: 62.0
RHH5314_R3681
62.0
RHH5222_R3594
91.5
RHH5251_R3623
68.5
RHH5280_R3652
64.2
Non-classical monocyte nTPM: 89.3
Samples: 4
Max nTPM: 112.9
Min nTPM: 72.2
RHH5315_R3682
82.0
RHH5223_R3595
112.9
RHH5252_R3624
90.1
RHH5281_R3653
72.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.6
Schmiedel sample id
TPM
Classical monocyte TPM: 53.8
Samples: 91
Max TPM: 67.8
Min TPM: 41.4
MONOCYTES_1
67.8
MONOCYTES_2
66.8
MONOCYTES_3
62.9
MONOCYTES_4
62.8
MONOCYTES_5
62.4
MONOCYTES_6
62.2
MONOCYTES_7
62.2
MONOCYTES_8
62.1
MONOCYTES_9
60.8
MONOCYTES_10
60.5
MONOCYTES_11
60.1
MONOCYTES_12
59.9
MONOCYTES_13
59.8
MONOCYTES_14
59.6
MONOCYTES_15
58.9
MONOCYTES_16
58.8
MONOCYTES_17
58.7
MONOCYTES_18
58.5
MONOCYTES_19
58.4
MONOCYTES_20
57.8
MONOCYTES_21
57.6
MONOCYTES_22
57.3
MONOCYTES_23
57.2
MONOCYTES_24
57.2
MONOCYTES_25
57.1
MONOCYTES_26
57.0
MONOCYTES_27
56.5
MONOCYTES_28
56.4
MONOCYTES_29
56.2
MONOCYTES_30
56.2
MONOCYTES_31
55.9
MONOCYTES_32
55.6
MONOCYTES_33
55.5
MONOCYTES_34
55.4
MONOCYTES_35
55.3
MONOCYTES_36
55.2
MONOCYTES_37
55.2
MONOCYTES_38
55.2
MONOCYTES_39
54.6
MONOCYTES_40
54.5
MONOCYTES_41
54.1
MONOCYTES_42
53.9
MONOCYTES_43
53.8
MONOCYTES_44
53.7
MONOCYTES_45
53.7
MONOCYTES_46
53.6
MONOCYTES_47
53.6
MONOCYTES_48
53.5
MONOCYTES_49
53.4
MONOCYTES_50
53.1
MONOCYTES_51
53.1
MONOCYTES_52
53.0
MONOCYTES_53
52.9
MONOCYTES_54
52.8
MONOCYTES_55
52.4
MONOCYTES_56
52.4
MONOCYTES_57
52.4
MONOCYTES_58
52.4
MONOCYTES_59
52.3
MONOCYTES_60
52.2
MONOCYTES_61
52.1
MONOCYTES_62
52.1
MONOCYTES_63
51.9
MONOCYTES_64
51.9
MONOCYTES_65
51.8
MONOCYTES_66
51.6
MONOCYTES_67
51.5
MONOCYTES_68
51.4
MONOCYTES_69
51.2
MONOCYTES_70
51.0
MONOCYTES_71
50.5
MONOCYTES_72
49.6
MONOCYTES_73
49.5
MONOCYTES_74
49.3
MONOCYTES_75
49.2
MONOCYTES_76
49.0
MONOCYTES_77
48.6
MONOCYTES_78
48.3
MONOCYTES_79
47.5
MONOCYTES_80
47.3
MONOCYTES_81
46.9
MONOCYTES_82
46.0
MONOCYTES_83
45.8
MONOCYTES_84
45.7
MONOCYTES_85
45.4
MONOCYTES_86
45.3
MONOCYTES_87
44.6
MONOCYTES_88
43.3
MONOCYTES_89
42.9
MONOCYTES_90
42.2
MONOCYTES_91
41.4
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Non-classical monocyte TPM: 70.6
Samples: 90
Max TPM: 92.1
Min TPM: 56.1
M2_1
92.1
M2_2
85.8
M2_3
81.0
M2_4
80.6
M2_5
80.4
M2_6
79.6
M2_7
79.5
M2_8
79.0
M2_9
78.3
M2_10
77.6
M2_11
76.5
M2_12
76.3
M2_13
76.1
M2_14
75.9
M2_15
75.9
M2_16
75.8
M2_17
75.1
M2_18
74.8
M2_19
74.8
M2_20
74.6
M2_21
74.5
M2_22
74.4
M2_23
74.0
M2_24
73.8
M2_25
73.6
M2_26
73.5
M2_27
73.5
M2_28
73.5
M2_29
73.2
M2_30
73.2
M2_31
72.8
M2_32
72.7
M2_33
72.5
M2_34
72.3
M2_35
72.1
M2_36
72.0
M2_37
71.7
M2_38
71.0
M2_39
70.9
M2_40
70.8
M2_41
70.7
M2_42
70.7
M2_43
70.6
M2_44
70.5
M2_45
70.4
M2_46
70.4
M2_47
70.3
M2_48
70.0
M2_49
70.0
M2_50
70.0
M2_51
69.7
M2_52
69.6
M2_53
69.5
M2_54
68.7
M2_55
68.7
M2_56
68.1
M2_57
68.0
M2_58
67.9
M2_59
67.8
M2_60
67.8
M2_61
67.6
M2_62
67.4
M2_63
67.3
M2_64
67.2
M2_65
67.2
M2_66
67.2
M2_67
67.1
M2_68
66.9
M2_69
66.9
M2_70
66.7
M2_71
66.7
M2_72
66.4
M2_73
66.3
M2_74
66.0
M2_75
65.9
M2_76
65.0
M2_77
64.8
M2_78
64.5
M2_79
64.3
M2_80
63.3
M2_81
63.2
M2_82
62.9
M2_83
62.7
M2_84
62.5
M2_85
61.8
M2_86
61.2
M2_87
60.7
M2_88
60.2
M2_89
59.9
M2_90
56.1
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