A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.4
nTPM
Monaco:
20.2
nTPM
Schmiedel:
70.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.4
HPA sample
nTPM
Memory B-cell nTPM: 0.7
Samples: 6
Max nTPM: 1.9
Min nTPM: 0.0
P10809_1017
0.4
P10809_1025
0.1
P10809_1044
0.0
P10809_1063
0.4
P10809_1092
1.9
P10809_1105
1.1
Naive B-cell nTPM: 1.4
Samples: 6
Max nTPM: 5.7
Min nTPM: 0.2
P10809_1011
0.6
P10809_1029
0.2
P10809_1048
5.7
P10809_1067
0.4
P10809_1091
0.9
P10809_1104
0.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 13.6
Samples: 4
Max nTPM: 19.3
Min nTPM: 8.8
RHH5310_R3677
12.7
RHH5218_R3590
8.8
RHH5247_R3619
13.7
RHH5276_R3648
19.3
Naive B-cell nTPM: 14.5
Samples: 4
Max nTPM: 25.3
Min nTPM: 7.4
RHH5308_R3675
7.4
RHH5216_R3588
8.6
RHH5245_R3617
16.5
RHH5274_R3646
25.3
Non-switched memory B-cell nTPM: 11.9
Samples: 4
Max nTPM: 14.9
Min nTPM: 8.0
RHH5309_R3676
8.0
RHH5217_R3589
11.3
RHH5246_R3618
13.2
RHH5275_R3647
14.9
Plasmablast nTPM: 20.3
Samples: 4
Max nTPM: 22.3
Min nTPM: 17.7
RHH5312_R3679
22.3
RHH5220_R3592
20.9
RHH5249_R3621
20.1
RHH5278_R3650
17.7
Switched memory B-cell nTPM: 19.2
Samples: 4
Max nTPM: 30.1
Min nTPM: 7.0
RHH5311_R3678
14.0
RHH5219_R3591
7.0
RHH5248_R3620
30.1
RHH5277_R3649
25.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.1
Schmiedel sample id
TPM
Naive B-cell TPM: 70.1
Samples: 91
Max TPM: 117.5
Min TPM: 47.4
B_CELL_NAIVE_1
117.5
B_CELL_NAIVE_2
94.7
B_CELL_NAIVE_3
91.5
B_CELL_NAIVE_4
89.8
B_CELL_NAIVE_5
89.7
B_CELL_NAIVE_6
87.7
B_CELL_NAIVE_7
83.5
B_CELL_NAIVE_8
83.3
B_CELL_NAIVE_9
82.8
B_CELL_NAIVE_10
82.4
B_CELL_NAIVE_11
82.3
B_CELL_NAIVE_12
81.5
B_CELL_NAIVE_13
80.9
B_CELL_NAIVE_14
79.9
B_CELL_NAIVE_15
79.0
B_CELL_NAIVE_16
78.4
B_CELL_NAIVE_17
78.3
B_CELL_NAIVE_18
78.2
B_CELL_NAIVE_19
77.6
B_CELL_NAIVE_20
77.5
B_CELL_NAIVE_21
76.8
B_CELL_NAIVE_22
76.6
B_CELL_NAIVE_23
76.5
B_CELL_NAIVE_24
76.4
B_CELL_NAIVE_25
76.4
B_CELL_NAIVE_26
76.1
B_CELL_NAIVE_27
75.5
B_CELL_NAIVE_28
75.1
B_CELL_NAIVE_29
74.5
B_CELL_NAIVE_30
74.4
B_CELL_NAIVE_31
74.2
B_CELL_NAIVE_32
74.2
B_CELL_NAIVE_33
74.1
B_CELL_NAIVE_34
73.4
B_CELL_NAIVE_35
72.7
B_CELL_NAIVE_36
72.5
B_CELL_NAIVE_37
71.6
B_CELL_NAIVE_38
71.3
B_CELL_NAIVE_39
71.0
B_CELL_NAIVE_40
70.7
B_CELL_NAIVE_41
70.7
B_CELL_NAIVE_42
70.6
B_CELL_NAIVE_43
70.3
B_CELL_NAIVE_44
68.9
B_CELL_NAIVE_45
68.6
B_CELL_NAIVE_46
68.2
B_CELL_NAIVE_47
68.1
B_CELL_NAIVE_48
67.9
B_CELL_NAIVE_49
67.7
B_CELL_NAIVE_50
67.6
B_CELL_NAIVE_51
67.4
B_CELL_NAIVE_52
67.3
B_CELL_NAIVE_53
67.1
B_CELL_NAIVE_54
67.0
B_CELL_NAIVE_55
66.8
B_CELL_NAIVE_56
66.0
B_CELL_NAIVE_57
65.9
B_CELL_NAIVE_58
65.8
B_CELL_NAIVE_59
65.0
B_CELL_NAIVE_60
64.7
B_CELL_NAIVE_61
64.6
B_CELL_NAIVE_62
64.6
B_CELL_NAIVE_63
64.6
B_CELL_NAIVE_64
64.1
B_CELL_NAIVE_65
63.8
B_CELL_NAIVE_66
63.8
B_CELL_NAIVE_67
63.8
B_CELL_NAIVE_68
63.5
B_CELL_NAIVE_69
63.4
B_CELL_NAIVE_70
63.0
B_CELL_NAIVE_71
62.6
B_CELL_NAIVE_72
62.6
B_CELL_NAIVE_73
62.2
B_CELL_NAIVE_74
62.1
B_CELL_NAIVE_75
61.3
B_CELL_NAIVE_76
60.3
B_CELL_NAIVE_77
60.0
B_CELL_NAIVE_78
59.4
B_CELL_NAIVE_79
58.8
B_CELL_NAIVE_80
58.3
B_CELL_NAIVE_81
57.4
B_CELL_NAIVE_82
57.4
B_CELL_NAIVE_83
56.7
B_CELL_NAIVE_84
56.3
B_CELL_NAIVE_85
56.0
B_CELL_NAIVE_86
55.8
B_CELL_NAIVE_87
54.8
B_CELL_NAIVE_88
51.4
B_CELL_NAIVE_89
51.3
B_CELL_NAIVE_90
51.2
B_CELL_NAIVE_91
47.4
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