A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
240.0
nTPM
Monaco:
1679.0
nTPM
Schmiedel:
1067.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
240.0
HPA sample
nTPM
Classical monocyte nTPM: 240.0
Samples: 6
Max nTPM: 411.3
Min nTPM: 164.5
P10809_1003
411.3
P10809_1020
164.5
P10809_1039
203.4
P10809_1058
273.0
P10809_1080
211.0
P10809_1107
176.6
Intermediate monocyte nTPM: 31.3
Samples: 6
Max nTPM: 69.2
Min nTPM: 13.1
P10809_1004
22.5
P10809_1023
13.1
P10809_1042
35.1
P10809_1061
69.2
P10809_1081
32.6
P10809_1108
15.1
Non-classical monocyte nTPM: 3.6
Samples: 5
Max nTPM: 5.7
Min nTPM: 0.4
P10809_1005
5.7
P10809_1053
5.2
P10809_1072
0.4
P10809_1082
4.3
P10809_1109
2.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1679.0
Monaco sample
nTPM
Classical monocyte nTPM: 1679.0
Samples: 4
Max nTPM: 2331.1
Min nTPM: 1235.9
RHH5313_R3680
1771.9
RHH5221_R3593
1235.9
RHH5250_R3622
2331.1
RHH5279_R3651
1377.0
Intermediate monocyte nTPM: 217.4
Samples: 4
Max nTPM: 268.9
Min nTPM: 151.0
RHH5314_R3681
268.9
RHH5222_R3594
151.0
RHH5251_R3623
215.0
RHH5280_R3652
234.5
Non-classical monocyte nTPM: 38.3
Samples: 4
Max nTPM: 48.5
Min nTPM: 22.5
RHH5315_R3682
44.5
RHH5223_R3595
22.5
RHH5252_R3624
48.5
RHH5281_R3653
37.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1067.7
Schmiedel sample id
TPM
Classical monocyte TPM: 1067.7
Samples: 91
Max TPM: 1663.5
Min TPM: 551.2
MONOCYTES_1
1663.5
MONOCYTES_2
1596.8
MONOCYTES_3
1525.0
MONOCYTES_4
1522.9
MONOCYTES_5
1498.9
MONOCYTES_6
1423.9
MONOCYTES_7
1391.4
MONOCYTES_8
1379.3
MONOCYTES_9
1368.8
MONOCYTES_10
1364.6
MONOCYTES_11
1354.1
MONOCYTES_12
1331.6
MONOCYTES_13
1301.1
MONOCYTES_14
1300.2
MONOCYTES_15
1295.4
MONOCYTES_16
1285.0
MONOCYTES_17
1269.9
MONOCYTES_18
1267.4
MONOCYTES_19
1259.5
MONOCYTES_20
1245.4
MONOCYTES_21
1244.5
MONOCYTES_22
1240.0
MONOCYTES_23
1238.1
MONOCYTES_24
1238.0
MONOCYTES_25
1237.5
MONOCYTES_26
1226.8
MONOCYTES_27
1193.2
MONOCYTES_28
1190.3
MONOCYTES_29
1189.4
MONOCYTES_30
1189.1
MONOCYTES_31
1184.8
MONOCYTES_32
1163.0
MONOCYTES_33
1161.8
MONOCYTES_34
1140.4
MONOCYTES_35
1128.0
MONOCYTES_36
1119.0
MONOCYTES_37
1101.9
MONOCYTES_38
1096.6
MONOCYTES_39
1076.1
MONOCYTES_40
1070.7
MONOCYTES_41
1060.2
MONOCYTES_42
1052.3
MONOCYTES_43
1048.7
MONOCYTES_44
1044.2
MONOCYTES_45
1035.0
MONOCYTES_46
1033.1
MONOCYTES_47
1028.0
MONOCYTES_48
1026.8
MONOCYTES_49
1022.9
MONOCYTES_50
1014.6
MONOCYTES_51
997.6
MONOCYTES_52
992.3
MONOCYTES_53
987.5
MONOCYTES_54
982.1
MONOCYTES_55
979.5
MONOCYTES_56
973.5
MONOCYTES_57
972.7
MONOCYTES_58
966.7
MONOCYTES_59
961.0
MONOCYTES_60
957.1
MONOCYTES_61
955.0
MONOCYTES_62
950.0
MONOCYTES_63
948.9
MONOCYTES_64
941.7
MONOCYTES_65
924.7
MONOCYTES_66
921.2
MONOCYTES_67
917.7
MONOCYTES_68
914.6
MONOCYTES_69
908.1
MONOCYTES_70
904.5
MONOCYTES_71
899.9
MONOCYTES_72
896.2
MONOCYTES_73
893.9
MONOCYTES_74
880.8
MONOCYTES_75
879.6
MONOCYTES_76
872.8
MONOCYTES_77
861.5
MONOCYTES_78
858.8
MONOCYTES_79
839.4
MONOCYTES_80
836.3
MONOCYTES_81
835.3
MONOCYTES_82
801.9
MONOCYTES_83
787.4
MONOCYTES_84
758.1
MONOCYTES_85
742.5
MONOCYTES_86
739.0
MONOCYTES_87
734.9
MONOCYTES_88
686.3
MONOCYTES_89
672.2
MONOCYTES_90
634.9
MONOCYTES_91
551.2
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Non-classical monocyte TPM: 18.1
Samples: 90
Max TPM: 37.7
Min TPM: 5.1
M2_1
37.7
M2_2
35.8
M2_3
35.3
M2_4
35.2
M2_5
31.8
M2_6
30.4
M2_7
29.1
M2_8
27.1
M2_9
26.6
M2_10
26.5
M2_11
26.4
M2_12
25.7
M2_13
25.7
M2_14
25.5
M2_15
25.0
M2_16
24.1
M2_17
23.8
M2_18
23.5
M2_19
23.4
M2_20
23.2
M2_21
23.1
M2_22
23.0
M2_23
22.2
M2_24
21.5
M2_25
21.5
M2_26
21.4
M2_27
21.1
M2_28
20.9
M2_29
20.3
M2_30
20.1
M2_31
19.9
M2_32
19.9
M2_33
19.7
M2_34
19.7
M2_35
19.7
M2_36
19.7
M2_37
18.8
M2_38
18.7
M2_39
18.5
M2_40
18.2
M2_41
18.2
M2_42
17.9
M2_43
17.8
M2_44
17.7
M2_45
17.3
M2_46
17.2
M2_47
16.7
M2_48
16.6
M2_49
16.1
M2_50
16.0
M2_51
15.6
M2_52
15.5
M2_53
15.4
M2_54
15.4
M2_55
15.4
M2_56
14.6
M2_57
14.6
M2_58
14.5
M2_59
13.9
M2_60
13.7
M2_61
13.6
M2_62
13.6
M2_63
13.5
M2_64
13.5
M2_65
13.0
M2_66
12.9
M2_67
12.9
M2_68
12.8
M2_69
12.8
M2_70
12.7
M2_71
12.6
M2_72
12.5
M2_73
12.2
M2_74
11.5
M2_75
11.4
M2_76
11.2
M2_77
10.9
M2_78
10.6
M2_79
10.5
M2_80
10.4
M2_81
10.3
M2_82
10.3
M2_83
10.2
M2_84
10.2
M2_85
10.2
M2_86
10.1
M2_87
10.0
M2_88
9.3
M2_89
9.2
M2_90
5.1
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