A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.8
nTPM
Monaco:
151.1
nTPM
Schmiedel:
26.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.8
HPA sample
nTPM
Classical monocyte nTPM: 3.3
Samples: 6
Max nTPM: 7.5
Min nTPM: 1.6
P10809_1003
3.8
P10809_1020
1.6
P10809_1039
2.8
P10809_1058
2.5
P10809_1080
7.5
P10809_1107
1.7
Intermediate monocyte nTPM: 16.8
Samples: 6
Max nTPM: 35.8
Min nTPM: 3.8
P10809_1004
35.8
P10809_1023
3.8
P10809_1042
15.0
P10809_1061
10.7
P10809_1081
29.9
P10809_1108
5.8
Non-classical monocyte nTPM: 8.7
Samples: 5
Max nTPM: 21.4
Min nTPM: 3.5
P10809_1005
21.4
P10809_1053
5.5
P10809_1072
7.1
P10809_1082
6.1
P10809_1109
3.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
151.1
Monaco sample
nTPM
Classical monocyte nTPM: 33.4
Samples: 4
Max nTPM: 65.0
Min nTPM: 10.9
RHH5313_R3680
10.9
RHH5221_R3593
65.0
RHH5250_R3622
35.9
RHH5279_R3651
21.9
Intermediate monocyte nTPM: 146.1
Samples: 4
Max nTPM: 302.5
Min nTPM: 49.3
RHH5314_R3681
49.3
RHH5222_R3594
302.5
RHH5251_R3623
158.9
RHH5280_R3652
73.8
Non-classical monocyte nTPM: 151.1
Samples: 4
Max nTPM: 295.7
Min nTPM: 34.7
RHH5315_R3682
34.7
RHH5223_R3595
295.7
RHH5252_R3624
173.0
RHH5281_R3653
101.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.5
Schmiedel sample id
TPM
Classical monocyte TPM: 6.6
Samples: 91
Max TPM: 14.9
Min TPM: 1.3
MONOCYTES_1
14.9
MONOCYTES_2
14.8
MONOCYTES_3
13.8
MONOCYTES_4
13.8
MONOCYTES_5
12.9
MONOCYTES_6
12.7
MONOCYTES_7
12.6
MONOCYTES_8
12.1
MONOCYTES_9
11.9
MONOCYTES_10
11.5
MONOCYTES_11
11.3
MONOCYTES_12
11.3
MONOCYTES_13
10.9
MONOCYTES_14
10.8
MONOCYTES_15
10.8
MONOCYTES_16
10.7
MONOCYTES_17
10.6
MONOCYTES_18
10.4
MONOCYTES_19
10.4
MONOCYTES_20
9.9
MONOCYTES_21
9.5
MONOCYTES_22
9.4
MONOCYTES_23
8.8
MONOCYTES_24
8.8
MONOCYTES_25
8.3
MONOCYTES_26
8.3
MONOCYTES_27
8.2
MONOCYTES_28
8.1
MONOCYTES_29
8.1
MONOCYTES_30
8.1
MONOCYTES_31
7.9
MONOCYTES_32
7.7
MONOCYTES_33
7.6
MONOCYTES_34
7.6
MONOCYTES_35
7.5
MONOCYTES_36
7.2
MONOCYTES_37
7.1
MONOCYTES_38
7.1
MONOCYTES_39
7.0
MONOCYTES_40
6.8
MONOCYTES_41
6.8
MONOCYTES_42
6.4
MONOCYTES_43
6.3
MONOCYTES_44
6.3
MONOCYTES_45
6.2
MONOCYTES_46
5.9
MONOCYTES_47
5.8
MONOCYTES_48
5.8
MONOCYTES_49
5.7
MONOCYTES_50
5.7
MONOCYTES_51
5.7
MONOCYTES_52
5.6
MONOCYTES_53
5.6
MONOCYTES_54
5.4
MONOCYTES_55
5.2
MONOCYTES_56
5.2
MONOCYTES_57
5.1
MONOCYTES_58
5.0
MONOCYTES_59
5.0
MONOCYTES_60
4.8
MONOCYTES_61
4.7
MONOCYTES_62
4.5
MONOCYTES_63
4.5
MONOCYTES_64
4.4
MONOCYTES_65
4.2
MONOCYTES_66
4.1
MONOCYTES_67
4.0
MONOCYTES_68
4.0
MONOCYTES_69
3.9
MONOCYTES_70
3.7
MONOCYTES_71
3.3
MONOCYTES_72
3.0
MONOCYTES_73
3.0
MONOCYTES_74
3.0
MONOCYTES_75
2.9
MONOCYTES_76
2.6
MONOCYTES_77
2.6
MONOCYTES_78
2.4
MONOCYTES_79
2.4
MONOCYTES_80
2.3
MONOCYTES_81
2.2
MONOCYTES_82
2.2
MONOCYTES_83
2.1
MONOCYTES_84
2.0
MONOCYTES_85
2.0
MONOCYTES_86
1.9
MONOCYTES_87
1.8
MONOCYTES_88
1.7
MONOCYTES_89
1.7
MONOCYTES_90
1.5
MONOCYTES_91
1.3
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Non-classical monocyte TPM: 26.6
Samples: 90
Max TPM: 75.2
Min TPM: 3.7
M2_1
75.2
M2_2
73.4
M2_3
65.5
M2_4
61.9
M2_5
60.8
M2_6
58.2
M2_7
54.3
M2_8
53.5
M2_9
53.5
M2_10
48.4
M2_11
48.0
M2_12
43.4
M2_13
43.0
M2_14
43.0
M2_15
42.0
M2_16
40.7
M2_17
40.0
M2_18
38.2
M2_19
37.9
M2_20
34.2
M2_21
34.1
M2_22
33.9
M2_23
33.4
M2_24
32.7
M2_25
32.5
M2_26
32.5
M2_27
32.5
M2_28
32.4
M2_29
30.6
M2_30
30.5
M2_31
30.3
M2_32
30.2
M2_33
29.5
M2_34
29.3
M2_35
28.8
M2_36
28.5
M2_37
27.6
M2_38
27.4
M2_39
27.3
M2_40
27.2
M2_41
26.8
M2_42
25.2
M2_43
24.4
M2_44
24.4
M2_45
23.9
M2_46
23.3
M2_47
22.8
M2_48
21.9
M2_49
20.4
M2_50
20.0
M2_51
19.8
M2_52
19.8
M2_53
19.7
M2_54
19.5
M2_55
18.7
M2_56
18.6
M2_57
18.3
M2_58
16.7
M2_59
16.7
M2_60
16.6
M2_61
16.5
M2_62
15.4
M2_63
14.9
M2_64
14.7
M2_65
14.5
M2_66
14.1
M2_67
13.9
M2_68
13.9
M2_69
13.8
M2_70
13.3
M2_71
12.9
M2_72
12.8
M2_73
12.6
M2_74
12.6
M2_75
12.1
M2_76
11.6
M2_77
11.5
M2_78
11.5
M2_79
11.1
M2_80
10.8
M2_81
10.6
M2_82
10.3
M2_83
9.5
M2_84
9.4
M2_85
9.4
M2_86
8.2
M2_87
7.9
M2_88
6.5
M2_89
5.9
M2_90
3.7
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