A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
18.0
nTPM
Monaco:
64.3
nTPM
Schmiedel:
13.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.0
HPA sample
nTPM
Memory B-cell nTPM: 15.8
Samples: 6
Max nTPM: 18.9
Min nTPM: 12.2
P10809_1017
14.8
P10809_1025
12.2
P10809_1044
18.9
P10809_1063
15.8
P10809_1092
18.9
P10809_1105
13.9
Naive B-cell nTPM: 17.9
Samples: 6
Max nTPM: 21.4
Min nTPM: 14.8
P10809_1011
15.9
P10809_1029
15.9
P10809_1048
21.4
P10809_1067
18.3
P10809_1091
14.8
P10809_1104
21.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 47.1
Samples: 4
Max nTPM: 67.7
Min nTPM: 34.1
RHH5310_R3677
42.5
RHH5218_R3590
67.7
RHH5247_R3619
44.1
RHH5276_R3648
34.1
Naive B-cell nTPM: 41.0
Samples: 4
Max nTPM: 58.5
Min nTPM: 32.6
RHH5308_R3675
33.6
RHH5216_R3588
39.1
RHH5245_R3617
32.6
RHH5274_R3646
58.5
Non-switched memory B-cell nTPM: 37.4
Samples: 4
Max nTPM: 53.9
Min nTPM: 31.1
RHH5309_R3676
33.6
RHH5217_R3589
31.1
RHH5246_R3618
53.9
RHH5275_R3647
31.2
Plasmablast nTPM: 64.3
Samples: 4
Max nTPM: 72.8
Min nTPM: 54.5
RHH5312_R3679
64.0
RHH5220_R3592
54.5
RHH5249_R3621
72.8
RHH5278_R3650
65.9
Switched memory B-cell nTPM: 44.9
Samples: 4
Max nTPM: 58.7
Min nTPM: 37.0
RHH5311_R3678
37.0
RHH5219_R3591
37.3
RHH5248_R3620
46.7
RHH5277_R3649
58.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.8
Schmiedel sample id
TPM
Naive B-cell TPM: 13.8
Samples: 91
Max TPM: 21.6
Min TPM: 8.6
B_CELL_NAIVE_1
21.6
B_CELL_NAIVE_2
21.3
B_CELL_NAIVE_3
20.9
B_CELL_NAIVE_4
20.1
B_CELL_NAIVE_5
20.0
B_CELL_NAIVE_6
19.7
B_CELL_NAIVE_7
17.9
B_CELL_NAIVE_8
17.6
B_CELL_NAIVE_9
17.4
B_CELL_NAIVE_10
17.2
B_CELL_NAIVE_11
17.1
B_CELL_NAIVE_12
17.0
B_CELL_NAIVE_13
16.8
B_CELL_NAIVE_14
16.6
B_CELL_NAIVE_15
16.1
B_CELL_NAIVE_16
16.0
B_CELL_NAIVE_17
15.6
B_CELL_NAIVE_18
15.6
B_CELL_NAIVE_19
15.5
B_CELL_NAIVE_20
15.2
B_CELL_NAIVE_21
15.2
B_CELL_NAIVE_22
15.0
B_CELL_NAIVE_23
15.0
B_CELL_NAIVE_24
14.9
B_CELL_NAIVE_25
14.9
B_CELL_NAIVE_26
14.9
B_CELL_NAIVE_27
14.8
B_CELL_NAIVE_28
14.5
B_CELL_NAIVE_29
14.2
B_CELL_NAIVE_30
14.2
B_CELL_NAIVE_31
14.1
B_CELL_NAIVE_32
14.0
B_CELL_NAIVE_33
14.0
B_CELL_NAIVE_34
13.7
B_CELL_NAIVE_35
13.6
B_CELL_NAIVE_36
13.6
B_CELL_NAIVE_37
13.4
B_CELL_NAIVE_38
13.3
B_CELL_NAIVE_39
13.3
B_CELL_NAIVE_40
13.3
B_CELL_NAIVE_41
13.3
B_CELL_NAIVE_42
13.2
B_CELL_NAIVE_43
13.2
B_CELL_NAIVE_44
13.2
B_CELL_NAIVE_45
13.2
B_CELL_NAIVE_46
13.1
B_CELL_NAIVE_47
13.1
B_CELL_NAIVE_48
13.1
B_CELL_NAIVE_49
13.1
B_CELL_NAIVE_50
13.0
B_CELL_NAIVE_51
13.0
B_CELL_NAIVE_52
12.9
B_CELL_NAIVE_53
12.9
B_CELL_NAIVE_54
12.9
B_CELL_NAIVE_55
12.7
B_CELL_NAIVE_56
12.7
B_CELL_NAIVE_57
12.6
B_CELL_NAIVE_58
12.6
B_CELL_NAIVE_59
12.5
B_CELL_NAIVE_60
12.5
B_CELL_NAIVE_61
12.5
B_CELL_NAIVE_62
12.5
B_CELL_NAIVE_63
12.5
B_CELL_NAIVE_64
12.4
B_CELL_NAIVE_65
12.4
B_CELL_NAIVE_66
12.4
B_CELL_NAIVE_67
12.3
B_CELL_NAIVE_68
12.3
B_CELL_NAIVE_69
12.3
B_CELL_NAIVE_70
12.3
B_CELL_NAIVE_71
12.2
B_CELL_NAIVE_72
12.2
B_CELL_NAIVE_73
12.2
B_CELL_NAIVE_74
12.2
B_CELL_NAIVE_75
12.1
B_CELL_NAIVE_76
12.1
B_CELL_NAIVE_77
11.9
B_CELL_NAIVE_78
11.8
B_CELL_NAIVE_79
11.5
B_CELL_NAIVE_80
11.3
B_CELL_NAIVE_81
11.2
B_CELL_NAIVE_82
11.1
B_CELL_NAIVE_83
11.0
B_CELL_NAIVE_84
10.8
B_CELL_NAIVE_85
10.4
B_CELL_NAIVE_86
10.3
B_CELL_NAIVE_87
10.3
B_CELL_NAIVE_88
10.1
B_CELL_NAIVE_89
9.4
B_CELL_NAIVE_90
9.2
B_CELL_NAIVE_91
8.6
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