A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
21.2
nTPM
Monaco:
66.5
nTPM
Schmiedel:
19.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.2
HPA sample
nTPM
Memory B-cell nTPM: 21.2
Samples: 6
Max nTPM: 26.3
Min nTPM: 10.2
P10809_1017
20.2
P10809_1025
25.7
P10809_1044
10.2
P10809_1063
20.8
P10809_1092
24.1
P10809_1105
26.3
Naive B-cell nTPM: 20.1
Samples: 6
Max nTPM: 48.6
Min nTPM: 11.4
P10809_1011
13.3
P10809_1029
17.3
P10809_1048
48.6
P10809_1067
11.4
P10809_1091
15.1
P10809_1104
14.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 39.1
Samples: 4
Max nTPM: 44.5
Min nTPM: 32.4
RHH5310_R3677
41.7
RHH5218_R3590
44.5
RHH5247_R3619
32.4
RHH5276_R3648
37.7
Naive B-cell nTPM: 35.1
Samples: 4
Max nTPM: 41.6
Min nTPM: 21.3
RHH5308_R3675
41.6
RHH5216_R3588
21.3
RHH5245_R3617
37.4
RHH5274_R3646
39.9
Non-switched memory B-cell nTPM: 41.5
Samples: 4
Max nTPM: 48.0
Min nTPM: 37.5
RHH5309_R3676
37.5
RHH5217_R3589
38.7
RHH5246_R3618
41.7
RHH5275_R3647
48.0
Plasmablast nTPM: 66.6
Samples: 4
Max nTPM: 78.7
Min nTPM: 59.3
RHH5312_R3679
59.3
RHH5220_R3592
63.2
RHH5249_R3621
78.7
RHH5278_R3650
65.0
Switched memory B-cell nTPM: 36.8
Samples: 4
Max nTPM: 37.4
Min nTPM: 35.2
RHH5311_R3678
37.3
RHH5219_R3591
35.2
RHH5248_R3620
37.4
RHH5277_R3649
37.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.7
Schmiedel sample id
TPM
Naive B-cell TPM: 19.7
Samples: 91
Max TPM: 24.9
Min TPM: 13.8
B_CELL_NAIVE_1
24.9
B_CELL_NAIVE_2
24.5
B_CELL_NAIVE_3
24.3
B_CELL_NAIVE_4
23.5
B_CELL_NAIVE_5
22.8
B_CELL_NAIVE_6
22.7
B_CELL_NAIVE_7
22.7
B_CELL_NAIVE_8
22.6
B_CELL_NAIVE_9
22.4
B_CELL_NAIVE_10
22.3
B_CELL_NAIVE_11
22.2
B_CELL_NAIVE_12
22.0
B_CELL_NAIVE_13
21.9
B_CELL_NAIVE_14
21.7
B_CELL_NAIVE_15
21.7
B_CELL_NAIVE_16
21.6
B_CELL_NAIVE_17
21.6
B_CELL_NAIVE_18
21.5
B_CELL_NAIVE_19
21.4
B_CELL_NAIVE_20
21.3
B_CELL_NAIVE_21
21.2
B_CELL_NAIVE_22
21.2
B_CELL_NAIVE_23
21.0
B_CELL_NAIVE_24
21.0
B_CELL_NAIVE_25
20.9
B_CELL_NAIVE_26
20.8
B_CELL_NAIVE_27
20.8
B_CELL_NAIVE_28
20.6
B_CELL_NAIVE_29
20.6
B_CELL_NAIVE_30
20.5
B_CELL_NAIVE_31
20.4
B_CELL_NAIVE_32
20.4
B_CELL_NAIVE_33
20.3
B_CELL_NAIVE_34
20.3
B_CELL_NAIVE_35
20.3
B_CELL_NAIVE_36
20.3
B_CELL_NAIVE_37
20.3
B_CELL_NAIVE_38
20.2
B_CELL_NAIVE_39
20.1
B_CELL_NAIVE_40
19.9
B_CELL_NAIVE_41
19.9
B_CELL_NAIVE_42
19.9
B_CELL_NAIVE_43
19.8
B_CELL_NAIVE_44
19.8
B_CELL_NAIVE_45
19.8
B_CELL_NAIVE_46
19.8
B_CELL_NAIVE_47
19.8
B_CELL_NAIVE_48
19.6
B_CELL_NAIVE_49
19.6
B_CELL_NAIVE_50
19.5
B_CELL_NAIVE_51
19.4
B_CELL_NAIVE_52
19.4
B_CELL_NAIVE_53
19.3
B_CELL_NAIVE_54
19.1
B_CELL_NAIVE_55
19.1
B_CELL_NAIVE_56
19.1
B_CELL_NAIVE_57
19.1
B_CELL_NAIVE_58
19.0
B_CELL_NAIVE_59
19.0
B_CELL_NAIVE_60
18.9
B_CELL_NAIVE_61
18.9
B_CELL_NAIVE_62
18.9
B_CELL_NAIVE_63
18.9
B_CELL_NAIVE_64
18.8
B_CELL_NAIVE_65
18.8
B_CELL_NAIVE_66
18.7
B_CELL_NAIVE_67
18.6
B_CELL_NAIVE_68
18.6
B_CELL_NAIVE_69
18.5
B_CELL_NAIVE_70
18.4
B_CELL_NAIVE_71
18.3
B_CELL_NAIVE_72
18.2
B_CELL_NAIVE_73
18.1
B_CELL_NAIVE_74
17.9
B_CELL_NAIVE_75
17.9
B_CELL_NAIVE_76
17.8
B_CELL_NAIVE_77
17.8
B_CELL_NAIVE_78
17.7
B_CELL_NAIVE_79
17.6
B_CELL_NAIVE_80
17.6
B_CELL_NAIVE_81
17.4
B_CELL_NAIVE_82
17.4
B_CELL_NAIVE_83
17.4
B_CELL_NAIVE_84
17.3
B_CELL_NAIVE_85
17.2
B_CELL_NAIVE_86
17.1
B_CELL_NAIVE_87
17.0
B_CELL_NAIVE_88
16.8
B_CELL_NAIVE_89
15.8
B_CELL_NAIVE_90
13.9
B_CELL_NAIVE_91
13.8
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