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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

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EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:31.2 nTPM
GTEx:19.3 nTPM
FANTOM5:30.0 Scaled Tags Per Million
Macaque:15.3 nTPM
Pig:31.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.2
Sample id Sample description nTPM
Substantia nigra
nTPM: 31.2
1851 Male, age 51, unknown 35.5
1916 Female, age 42, unknown 34.8
1889 Female, age 72, unknown 32.0
2699 Male, age 18, unknown 31.6
2409 Female, age 72, unknown 31.3
2590 Female, age 75, unknown 30.9
1941 Male, age 53, unknown 30.8
2241 Male, age 72, unknown 30.1
2583 Male, age 75, right hemisphere 28.5
2665 Male, age 74, both hemispheres 26.7

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

19.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.3
Samples: 183

Max nTPM: 43.6
Min nTPM: 6.1
Std nTPM: 5.9
Median nTPM: 18.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 43.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 37.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 36.5
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 33.5
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 33.4
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 33.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 32.7
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 32.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 30.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 30.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 30.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 30.0
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 29.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 26.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 26.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 26.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 26.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 26.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 26.2
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 25.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 25.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 25.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 25.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 25.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 25.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 24.8
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 24.8
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 24.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 24.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 24.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 24.4
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 24.3
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 24.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 24.1
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 24.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 23.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 23.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 23.5
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 23.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 22.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 22.7
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 22.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 22.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 22.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 22.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 22.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 22.3
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 22.0
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 22.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 21.9
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 21.9
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 21.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 21.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 21.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 21.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 21.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 21.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 21.6
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 21.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 21.5
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 21.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 21.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 21.3
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 21.3
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 20.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 20.7
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 20.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 20.6
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 20.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 20.4
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 20.4
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 20.4
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 20.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 20.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 19.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 19.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 19.8
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 19.8
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 19.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 19.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 19.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 19.8
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 19.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 19.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 19.5
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 19.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 19.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 19.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 19.1
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 19.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 18.9
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 18.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 18.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 18.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 18.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 18.7
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 18.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 18.4
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 18.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 18.3
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 18.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 18.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 17.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 17.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 17.9
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 17.8
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 17.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 17.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 17.8
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 17.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 17.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 17.7
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 17.4
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 17.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 17.3
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 17.3
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 17.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 17.1
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 17.0
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 16.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 16.7
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 16.7
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 16.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 16.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 16.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 16.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 16.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 16.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 16.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 16.2
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 16.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 16.0
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 16.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 15.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 15.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 15.7
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 15.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 15.5
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 15.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 15.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 15.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 14.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 14.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 14.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 14.3
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 14.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 14.0
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 13.8
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 13.8
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 13.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 13.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 13.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 13.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 13.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 13.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 13.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 12.8
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 12.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 12.8
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 12.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 12.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 12.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 11.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 11.9
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 11.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 11.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 11.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 11.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 11.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 11.3
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 11.3
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 11.3
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 11.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 10.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 10.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 10.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 10.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 9.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 9.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 9.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 9.4
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 9.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 6.1
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

30.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.0
FF:10158-103A5 76 years, female 30.0

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.3
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 15.3
Samples: 1

Max nTPM: 15.3
Min nTPM: 15.3
Sample A 15.3

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.3
Samples: 3

Max nTPM: 34.0
Min nTPM: 28.5
Sample A Female 31.5
Sample B Female 28.5
Sample C Male 34.0

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