A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1141.1
nTPM
Monaco:
821.0
nTPM
Schmiedel:
238.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1141.1
HPA sample
nTPM
Classical monocyte nTPM: 1141.1
Samples: 6
Max nTPM: 1450.7
Min nTPM: 887.2
P10809_1003
1186.3
P10809_1020
1285.4
P10809_1039
1450.7
P10809_1058
887.2
P10809_1080
1078.9
P10809_1107
958.0
Intermediate monocyte nTPM: 431.8
Samples: 6
Max nTPM: 519.0
Min nTPM: 352.6
P10809_1004
353.1
P10809_1023
519.0
P10809_1042
352.6
P10809_1061
447.5
P10809_1081
406.4
P10809_1108
512.5
Non-classical monocyte nTPM: 132.1
Samples: 5
Max nTPM: 238.4
Min nTPM: 64.2
P10809_1005
111.9
P10809_1053
64.2
P10809_1072
238.4
P10809_1082
83.6
P10809_1109
162.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
821.0
Monaco sample
nTPM
Classical monocyte nTPM: 821.0
Samples: 4
Max nTPM: 941.8
Min nTPM: 642.4
RHH5313_R3680
841.3
RHH5221_R3593
642.4
RHH5250_R3622
941.8
RHH5279_R3651
858.3
Intermediate monocyte nTPM: 227.3
Samples: 4
Max nTPM: 399.2
Min nTPM: 115.7
RHH5314_R3681
399.2
RHH5222_R3594
115.7
RHH5251_R3623
126.3
RHH5280_R3652
268.0
Non-classical monocyte nTPM: 53.5
Samples: 4
Max nTPM: 76.4
Min nTPM: 17.4
RHH5315_R3682
76.4
RHH5223_R3595
17.4
RHH5252_R3624
63.4
RHH5281_R3653
56.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
238.0
Schmiedel sample id
TPM
Classical monocyte TPM: 238.0
Samples: 91
Max TPM: 388.2
Min TPM: 83.6
MONOCYTES_1
388.2
MONOCYTES_2
373.7
MONOCYTES_3
336.7
MONOCYTES_4
334.2
MONOCYTES_5
331.4
MONOCYTES_6
330.8
MONOCYTES_7
326.3
MONOCYTES_8
318.1
MONOCYTES_9
316.4
MONOCYTES_10
313.8
MONOCYTES_11
309.1
MONOCYTES_12
306.1
MONOCYTES_13
301.3
MONOCYTES_14
298.6
MONOCYTES_15
294.8
MONOCYTES_16
292.4
MONOCYTES_17
289.8
MONOCYTES_18
288.6
MONOCYTES_19
283.9
MONOCYTES_20
282.9
MONOCYTES_21
282.1
MONOCYTES_22
280.6
MONOCYTES_23
276.7
MONOCYTES_24
270.1
MONOCYTES_25
269.8
MONOCYTES_26
269.8
MONOCYTES_27
269.2
MONOCYTES_28
263.2
MONOCYTES_29
262.4
MONOCYTES_30
262.2
MONOCYTES_31
261.3
MONOCYTES_32
259.9
MONOCYTES_33
256.8
MONOCYTES_34
256.4
MONOCYTES_35
256.0
MONOCYTES_36
249.6
MONOCYTES_37
247.8
MONOCYTES_38
246.2
MONOCYTES_39
244.8
MONOCYTES_40
243.4
MONOCYTES_41
239.5
MONOCYTES_42
239.0
MONOCYTES_43
238.6
MONOCYTES_44
236.7
MONOCYTES_45
235.9
MONOCYTES_46
235.5
MONOCYTES_47
235.3
MONOCYTES_48
234.3
MONOCYTES_49
232.7
MONOCYTES_50
231.6
MONOCYTES_51
231.5
MONOCYTES_52
230.8
MONOCYTES_53
227.0
MONOCYTES_54
220.7
MONOCYTES_55
220.4
MONOCYTES_56
220.0
MONOCYTES_57
219.6
MONOCYTES_58
219.0
MONOCYTES_59
218.6
MONOCYTES_60
218.1
MONOCYTES_61
217.0
MONOCYTES_62
215.1
MONOCYTES_63
214.1
MONOCYTES_64
212.4
MONOCYTES_65
210.2
MONOCYTES_66
209.9
MONOCYTES_67
206.9
MONOCYTES_68
205.8
MONOCYTES_69
205.8
MONOCYTES_70
203.7
MONOCYTES_71
200.6
MONOCYTES_72
199.0
MONOCYTES_73
193.7
MONOCYTES_74
192.1
MONOCYTES_75
185.2
MONOCYTES_76
181.3
MONOCYTES_77
178.9
MONOCYTES_78
176.7
MONOCYTES_79
171.4
MONOCYTES_80
168.6
MONOCYTES_81
163.2
MONOCYTES_82
158.6
MONOCYTES_83
155.3
MONOCYTES_84
154.7
MONOCYTES_85
154.3
MONOCYTES_86
151.1
MONOCYTES_87
146.5
MONOCYTES_88
139.3
MONOCYTES_89
136.4
MONOCYTES_90
136.2
MONOCYTES_91
83.6
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Non-classical monocyte TPM: 15.1
Samples: 90
Max TPM: 39.6
Min TPM: 4.5
M2_1
39.6
M2_2
31.9
M2_3
31.5
M2_4
29.7
M2_5
27.1
M2_6
26.6
M2_7
25.8
M2_8
25.3
M2_9
24.8
M2_10
24.4
M2_11
24.0
M2_12
23.6
M2_13
22.6
M2_14
22.0
M2_15
21.8
M2_16
21.6
M2_17
20.8
M2_18
20.8
M2_19
20.5
M2_20
20.3
M2_21
20.3
M2_22
20.2
M2_23
20.2
M2_24
19.8
M2_25
19.8
M2_26
19.5
M2_27
19.2
M2_28
18.4
M2_29
18.4
M2_30
18.1
M2_31
17.8
M2_32
17.7
M2_33
17.4
M2_34
17.1
M2_35
16.8
M2_36
16.8
M2_37
16.6
M2_38
16.5
M2_39
16.4
M2_40
15.9
M2_41
15.7
M2_42
15.4
M2_43
15.4
M2_44
15.3
M2_45
15.1
M2_46
14.7
M2_47
14.6
M2_48
14.6
M2_49
14.5
M2_50
13.5
M2_51
13.3
M2_52
12.7
M2_53
12.7
M2_54
12.7
M2_55
12.4
M2_56
12.0
M2_57
11.7
M2_58
11.5
M2_59
11.4
M2_60
11.4
M2_61
11.0
M2_62
11.0
M2_63
10.8
M2_64
10.7
M2_65
10.6
M2_66
9.6
M2_67
9.2
M2_68
8.8
M2_69
8.7
M2_70
8.6
M2_71
8.6
M2_72
8.4
M2_73
7.9
M2_74
7.6
M2_75
7.6
M2_76
7.3
M2_77
7.2
M2_78
6.8
M2_79
6.4
M2_80
6.3
M2_81
6.2
M2_82
6.1
M2_83
5.5
M2_84
5.3
M2_85
4.9
M2_86
4.9
M2_87
4.8
M2_88
4.5
M2_89
4.5
M2_90
4.5
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