A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
709.9
nTPM
Monaco:
115.5
nTPM
Schmiedel:
128.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
709.9
HPA sample
nTPM
Classical monocyte nTPM: 641.9
Samples: 6
Max nTPM: 803.0
Min nTPM: 514.4
P10809_1003
590.1
P10809_1020
639.9
P10809_1039
803.0
P10809_1058
526.6
P10809_1080
514.4
P10809_1107
777.6
Intermediate monocyte nTPM: 709.9
Samples: 6
Max nTPM: 993.9
Min nTPM: 465.6
P10809_1004
509.6
P10809_1023
791.0
P10809_1042
886.6
P10809_1061
465.6
P10809_1081
612.5
P10809_1108
993.9
Non-classical monocyte nTPM: 547.3
Samples: 5
Max nTPM: 700.3
Min nTPM: 449.9
P10809_1005
449.9
P10809_1053
561.5
P10809_1072
503.5
P10809_1082
521.4
P10809_1109
700.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
115.5
Monaco sample
nTPM
Classical monocyte nTPM: 85.2
Samples: 4
Max nTPM: 105.0
Min nTPM: 61.7
RHH5313_R3680
105.0
RHH5221_R3593
61.7
RHH5250_R3622
86.1
RHH5279_R3651
87.9
Intermediate monocyte nTPM: 115.5
Samples: 4
Max nTPM: 133.6
Min nTPM: 97.4
RHH5314_R3681
133.6
RHH5222_R3594
125.2
RHH5251_R3623
97.4
RHH5280_R3652
105.8
Non-classical monocyte nTPM: 66.1
Samples: 4
Max nTPM: 81.5
Min nTPM: 54.9
RHH5315_R3682
81.5
RHH5223_R3595
54.9
RHH5252_R3624
57.8
RHH5281_R3653
70.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
128.1
Schmiedel sample id
TPM
Classical monocyte TPM: 128.1
Samples: 91
Max TPM: 163.1
Min TPM: 92.0
MONOCYTES_1
163.1
MONOCYTES_2
159.9
MONOCYTES_3
155.4
MONOCYTES_4
155.3
MONOCYTES_5
155.1
MONOCYTES_6
153.3
MONOCYTES_7
152.2
MONOCYTES_8
150.0
MONOCYTES_9
149.8
MONOCYTES_10
149.3
MONOCYTES_11
148.8
MONOCYTES_12
148.7
MONOCYTES_13
148.7
MONOCYTES_14
147.3
MONOCYTES_15
146.9
MONOCYTES_16
146.4
MONOCYTES_17
145.3
MONOCYTES_18
144.8
MONOCYTES_19
144.2
MONOCYTES_20
143.8
MONOCYTES_21
142.4
MONOCYTES_22
142.4
MONOCYTES_23
142.2
MONOCYTES_24
141.2
MONOCYTES_25
140.5
MONOCYTES_26
139.2
MONOCYTES_27
137.2
MONOCYTES_28
136.4
MONOCYTES_29
135.6
MONOCYTES_30
134.4
MONOCYTES_31
134.4
MONOCYTES_32
134.1
MONOCYTES_33
133.5
MONOCYTES_34
132.4
MONOCYTES_35
131.8
MONOCYTES_36
131.6
MONOCYTES_37
130.7
MONOCYTES_38
129.7
MONOCYTES_39
129.6
MONOCYTES_40
129.3
MONOCYTES_41
129.1
MONOCYTES_42
128.5
MONOCYTES_43
128.3
MONOCYTES_44
127.8
MONOCYTES_45
127.4
MONOCYTES_46
126.5
MONOCYTES_47
126.4
MONOCYTES_48
126.2
MONOCYTES_49
126.2
MONOCYTES_50
125.8
MONOCYTES_51
125.4
MONOCYTES_52
124.7
MONOCYTES_53
124.6
MONOCYTES_54
123.9
MONOCYTES_55
123.7
MONOCYTES_56
123.6
MONOCYTES_57
123.2
MONOCYTES_58
122.3
MONOCYTES_59
121.2
MONOCYTES_60
120.8
MONOCYTES_61
120.3
MONOCYTES_62
119.4
MONOCYTES_63
119.3
MONOCYTES_64
118.3
MONOCYTES_65
117.8
MONOCYTES_66
117.1
MONOCYTES_67
116.0
MONOCYTES_68
115.6
MONOCYTES_69
115.5
MONOCYTES_70
115.3
MONOCYTES_71
115.3
MONOCYTES_72
115.0
MONOCYTES_73
113.7
MONOCYTES_74
113.6
MONOCYTES_75
113.1
MONOCYTES_76
112.7
MONOCYTES_77
112.3
MONOCYTES_78
109.9
MONOCYTES_79
109.8
MONOCYTES_80
109.5
MONOCYTES_81
109.3
MONOCYTES_82
108.1
MONOCYTES_83
106.2
MONOCYTES_84
105.2
MONOCYTES_85
104.9
MONOCYTES_86
104.0
MONOCYTES_87
103.8
MONOCYTES_88
103.4
MONOCYTES_89
103.2
MONOCYTES_90
96.7
MONOCYTES_91
92.0
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Non-classical monocyte TPM: 89.0
Samples: 90
Max TPM: 150.4
Min TPM: 61.3
M2_1
150.4
M2_2
122.7
M2_3
122.4
M2_4
119.8
M2_5
118.8
M2_6
117.2
M2_7
117.1
M2_8
114.5
M2_9
113.5
M2_10
112.7
M2_11
112.1
M2_12
108.2
M2_13
108.0
M2_14
106.4
M2_15
104.6
M2_16
104.5
M2_17
101.4
M2_18
100.5
M2_19
99.9
M2_20
99.3
M2_21
98.9
M2_22
98.7
M2_23
97.6
M2_24
97.5
M2_25
97.0
M2_26
96.9
M2_27
96.6
M2_28
96.0
M2_29
95.8
M2_30
94.7
M2_31
94.1
M2_32
93.7
M2_33
91.8
M2_34
91.8
M2_35
91.2
M2_36
91.2
M2_37
91.1
M2_38
91.0
M2_39
90.7
M2_40
90.5
M2_41
90.3
M2_42
89.8
M2_43
88.8
M2_44
87.6
M2_45
87.5
M2_46
86.8
M2_47
86.7
M2_48
86.4
M2_49
86.3
M2_50
85.4
M2_51
84.9
M2_52
84.6
M2_53
84.2
M2_54
83.4
M2_55
82.2
M2_56
82.0
M2_57
81.6
M2_58
81.4
M2_59
81.3
M2_60
81.1
M2_61
80.0
M2_62
79.9
M2_63
79.6
M2_64
79.3
M2_65
79.2
M2_66
79.0
M2_67
77.7
M2_68
76.9
M2_69
76.8
M2_70
76.3
M2_71
74.8
M2_72
74.8
M2_73
74.4
M2_74
74.0
M2_75
73.8
M2_76
72.7
M2_77
72.0
M2_78
71.5
M2_79
71.2
M2_80
69.5
M2_81
69.4
M2_82
69.0
M2_83
68.5
M2_84
68.0
M2_85
66.6
M2_86
64.6
M2_87
63.4
M2_88
63.3
M2_89
62.0
M2_90
61.3
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