A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.2
nTPM
Monaco:
49.9
nTPM
Schmiedel:
24.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.2
HPA sample
nTPM
Classical monocyte nTPM: 8.5
Samples: 6
Max nTPM: 10.3
Min nTPM: 6.8
P10809_1003
10.3
P10809_1020
8.1
P10809_1039
6.8
P10809_1058
9.8
P10809_1080
8.9
P10809_1107
7.1
Intermediate monocyte nTPM: 9.2
Samples: 6
Max nTPM: 10.4
Min nTPM: 8.2
P10809_1004
10.4
P10809_1023
10.3
P10809_1042
8.5
P10809_1061
8.2
P10809_1081
9.1
P10809_1108
8.5
Non-classical monocyte nTPM: 6.2
Samples: 5
Max nTPM: 9.1
Min nTPM: 0.1
P10809_1005
5.9
P10809_1053
9.0
P10809_1072
0.1
P10809_1082
6.9
P10809_1109
9.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.9
Monaco sample
nTPM
Classical monocyte nTPM: 49.3
Samples: 4
Max nTPM: 55.1
Min nTPM: 39.0
RHH5313_R3680
49.4
RHH5221_R3593
55.1
RHH5250_R3622
53.8
RHH5279_R3651
39.0
Intermediate monocyte nTPM: 49.9
Samples: 4
Max nTPM: 66.2
Min nTPM: 36.2
RHH5314_R3681
36.2
RHH5222_R3594
66.2
RHH5251_R3623
46.2
RHH5280_R3652
51.1
Non-classical monocyte nTPM: 43.3
Samples: 4
Max nTPM: 45.1
Min nTPM: 42.3
RHH5315_R3682
42.5
RHH5223_R3595
43.3
RHH5252_R3624
45.1
RHH5281_R3653
42.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.4
Schmiedel sample id
TPM
Classical monocyte TPM: 17.6
Samples: 91
Max TPM: 25.6
Min TPM: 10.1
MONOCYTES_1
25.6
MONOCYTES_2
23.8
MONOCYTES_3
23.7
MONOCYTES_4
23.2
MONOCYTES_5
23.2
MONOCYTES_6
22.4
MONOCYTES_7
22.0
MONOCYTES_8
21.3
MONOCYTES_9
21.2
MONOCYTES_10
21.2
MONOCYTES_11
21.0
MONOCYTES_12
21.0
MONOCYTES_13
20.8
MONOCYTES_14
20.8
MONOCYTES_15
20.5
MONOCYTES_16
20.3
MONOCYTES_17
20.3
MONOCYTES_18
20.3
MONOCYTES_19
20.2
MONOCYTES_20
20.0
MONOCYTES_21
20.0
MONOCYTES_22
20.0
MONOCYTES_23
20.0
MONOCYTES_24
19.9
MONOCYTES_25
19.7
MONOCYTES_26
19.5
MONOCYTES_27
19.5
MONOCYTES_28
19.4
MONOCYTES_29
19.4
MONOCYTES_30
19.3
MONOCYTES_31
19.0
MONOCYTES_32
18.7
MONOCYTES_33
18.5
MONOCYTES_34
18.4
MONOCYTES_35
18.3
MONOCYTES_36
18.1
MONOCYTES_37
17.8
MONOCYTES_38
17.8
MONOCYTES_39
17.7
MONOCYTES_40
17.6
MONOCYTES_41
17.6
MONOCYTES_42
17.3
MONOCYTES_43
17.3
MONOCYTES_44
17.2
MONOCYTES_45
17.2
MONOCYTES_46
17.2
MONOCYTES_47
17.1
MONOCYTES_48
17.1
MONOCYTES_49
17.1
MONOCYTES_50
16.9
MONOCYTES_51
16.8
MONOCYTES_52
16.8
MONOCYTES_53
16.6
MONOCYTES_54
16.6
MONOCYTES_55
16.6
MONOCYTES_56
16.5
MONOCYTES_57
16.4
MONOCYTES_58
16.3
MONOCYTES_59
16.3
MONOCYTES_60
16.3
MONOCYTES_61
16.3
MONOCYTES_62
16.2
MONOCYTES_63
16.2
MONOCYTES_64
16.2
MONOCYTES_65
16.2
MONOCYTES_66
16.1
MONOCYTES_67
16.1
MONOCYTES_68
15.7
MONOCYTES_69
15.6
MONOCYTES_70
15.4
MONOCYTES_71
15.2
MONOCYTES_72
15.2
MONOCYTES_73
15.2
MONOCYTES_74
14.9
MONOCYTES_75
14.7
MONOCYTES_76
14.7
MONOCYTES_77
14.6
MONOCYTES_78
14.5
MONOCYTES_79
14.3
MONOCYTES_80
14.1
MONOCYTES_81
14.1
MONOCYTES_82
14.1
MONOCYTES_83
13.9
MONOCYTES_84
13.8
MONOCYTES_85
13.8
MONOCYTES_86
13.7
MONOCYTES_87
13.5
MONOCYTES_88
13.4
MONOCYTES_89
13.2
MONOCYTES_90
11.7
MONOCYTES_91
10.1
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Non-classical monocyte TPM: 24.4
Samples: 90
Max TPM: 37.7
Min TPM: 11.5
M2_1
37.7
M2_2
37.1
M2_3
35.5
M2_4
35.4
M2_5
34.1
M2_6
32.8
M2_7
31.3
M2_8
31.2
M2_9
31.2
M2_10
30.6
M2_11
30.1
M2_12
29.5
M2_13
29.5
M2_14
29.3
M2_15
29.1
M2_16
28.8
M2_17
28.8
M2_18
28.8
M2_19
28.0
M2_20
28.0
M2_21
27.7
M2_22
27.6
M2_23
27.2
M2_24
26.9
M2_25
26.7
M2_26
26.6
M2_27
26.5
M2_28
26.5
M2_29
26.4
M2_30
26.1
M2_31
26.0
M2_32
25.7
M2_33
25.6
M2_34
25.6
M2_35
25.5
M2_36
25.4
M2_37
25.3
M2_38
25.1
M2_39
24.9
M2_40
24.6
M2_41
24.4
M2_42
23.9
M2_43
23.9
M2_44
23.7
M2_45
23.5
M2_46
23.5
M2_47
23.5
M2_48
23.1
M2_49
23.1
M2_50
23.0
M2_51
22.9
M2_52
22.8
M2_53
22.8
M2_54
22.7
M2_55
22.6
M2_56
22.5
M2_57
22.4
M2_58
22.3
M2_59
22.2
M2_60
22.2
M2_61
22.0
M2_62
21.9
M2_63
21.8
M2_64
21.5
M2_65
21.5
M2_66
21.2
M2_67
21.1
M2_68
20.8
M2_69
20.6
M2_70
20.5
M2_71
20.0
M2_72
19.9
M2_73
19.9
M2_74
19.8
M2_75
19.7
M2_76
19.7
M2_77
19.6
M2_78
19.5
M2_79
19.5
M2_80
19.4
M2_81
19.3
M2_82
19.2
M2_83
18.6
M2_84
18.4
M2_85
18.1
M2_86
17.6
M2_87
17.1
M2_88
17.0
M2_89
16.2
M2_90
11.5
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