A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.6
nTPM
Monaco:
8.0
nTPM
Schmiedel:
23.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.6
HPA sample
nTPM
Classical monocyte nTPM: 0.6
Samples: 6
Max nTPM: 0.8
Min nTPM: 0.4
P10809_1003
0.7
P10809_1020
0.5
P10809_1039
0.8
P10809_1058
0.6
P10809_1080
0.5
P10809_1107
0.4
Intermediate monocyte nTPM: 0.7
Samples: 6
Max nTPM: 2.4
Min nTPM: 0.0
P10809_1004
0.6
P10809_1023
2.4
P10809_1042
0.0
P10809_1061
0.3
P10809_1081
0.4
P10809_1108
0.2
Non-classical monocyte nTPM: 1.6
Samples: 5
Max nTPM: 2.7
Min nTPM: 0.0
P10809_1005
2.7
P10809_1053
1.6
P10809_1072
0.0
P10809_1082
1.5
P10809_1109
2.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.0
Monaco sample
nTPM
Classical monocyte nTPM: 2.4
Samples: 4
Max nTPM: 3.5
Min nTPM: 1.2
RHH5313_R3680
3.3
RHH5221_R3593
1.2
RHH5250_R3622
1.5
RHH5279_R3651
3.5
Intermediate monocyte nTPM: 7.7
Samples: 4
Max nTPM: 10.4
Min nTPM: 5.7
RHH5314_R3681
5.7
RHH5222_R3594
6.7
RHH5251_R3623
10.4
RHH5280_R3652
8.0
Non-classical monocyte nTPM: 8.0
Samples: 4
Max nTPM: 12.7
Min nTPM: 6.0
RHH5315_R3682
12.7
RHH5223_R3595
6.1
RHH5252_R3624
6.0
RHH5281_R3653
7.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.4
Schmiedel sample id
TPM
Classical monocyte TPM: 7.5
Samples: 91
Max TPM: 12.2
Min TPM: 3.0
MONOCYTES_1
12.2
MONOCYTES_2
11.6
MONOCYTES_3
10.8
MONOCYTES_4
10.3
MONOCYTES_5
10.3
MONOCYTES_6
10.1
MONOCYTES_7
10.1
MONOCYTES_8
10.0
MONOCYTES_9
9.9
MONOCYTES_10
9.6
MONOCYTES_11
9.4
MONOCYTES_12
9.4
MONOCYTES_13
9.1
MONOCYTES_14
9.1
MONOCYTES_15
9.0
MONOCYTES_16
8.9
MONOCYTES_17
8.9
MONOCYTES_18
8.7
MONOCYTES_19
8.7
MONOCYTES_20
8.7
MONOCYTES_21
8.6
MONOCYTES_22
8.6
MONOCYTES_23
8.6
MONOCYTES_24
8.5
MONOCYTES_25
8.4
MONOCYTES_26
8.4
MONOCYTES_27
8.4
MONOCYTES_28
8.4
MONOCYTES_29
8.3
MONOCYTES_30
8.3
MONOCYTES_31
8.2
MONOCYTES_32
8.1
MONOCYTES_33
8.1
MONOCYTES_34
8.0
MONOCYTES_35
8.0
MONOCYTES_36
8.0
MONOCYTES_37
7.9
MONOCYTES_38
7.9
MONOCYTES_39
7.9
MONOCYTES_40
7.8
MONOCYTES_41
7.8
MONOCYTES_42
7.8
MONOCYTES_43
7.7
MONOCYTES_44
7.7
MONOCYTES_45
7.6
MONOCYTES_46
7.6
MONOCYTES_47
7.5
MONOCYTES_48
7.4
MONOCYTES_49
7.4
MONOCYTES_50
7.3
MONOCYTES_51
7.3
MONOCYTES_52
7.2
MONOCYTES_53
7.2
MONOCYTES_54
7.1
MONOCYTES_55
7.1
MONOCYTES_56
7.1
MONOCYTES_57
7.1
MONOCYTES_58
7.0
MONOCYTES_59
7.0
MONOCYTES_60
7.0
MONOCYTES_61
6.9
MONOCYTES_62
6.9
MONOCYTES_63
6.9
MONOCYTES_64
6.9
MONOCYTES_65
6.8
MONOCYTES_66
6.7
MONOCYTES_67
6.7
MONOCYTES_68
6.6
MONOCYTES_69
6.6
MONOCYTES_70
6.5
MONOCYTES_71
6.5
MONOCYTES_72
6.5
MONOCYTES_73
6.4
MONOCYTES_74
6.4
MONOCYTES_75
6.3
MONOCYTES_76
6.2
MONOCYTES_77
6.2
MONOCYTES_78
6.0
MONOCYTES_79
5.7
MONOCYTES_80
5.7
MONOCYTES_81
5.7
MONOCYTES_82
5.6
MONOCYTES_83
5.5
MONOCYTES_84
5.4
MONOCYTES_85
4.8
MONOCYTES_86
4.7
MONOCYTES_87
4.3
MONOCYTES_88
4.2
MONOCYTES_89
4.1
MONOCYTES_90
3.8
MONOCYTES_91
3.0
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Non-classical monocyte TPM: 23.4
Samples: 90
Max TPM: 52.1
Min TPM: 14.3
M2_1
52.1
M2_2
39.3
M2_3
36.0
M2_4
35.0
M2_5
32.5
M2_6
32.4
M2_7
32.2
M2_8
31.4
M2_9
30.3
M2_10
29.8
M2_11
29.6
M2_12
29.4
M2_13
28.6
M2_14
28.4
M2_15
28.4
M2_16
28.2
M2_17
27.7
M2_18
27.6
M2_19
27.4
M2_20
27.3
M2_21
27.1
M2_22
27.0
M2_23
26.3
M2_24
26.3
M2_25
25.9
M2_26
25.6
M2_27
25.6
M2_28
25.4
M2_29
25.0
M2_30
25.0
M2_31
25.0
M2_32
24.8
M2_33
24.7
M2_34
24.4
M2_35
24.4
M2_36
23.8
M2_37
23.5
M2_38
23.1
M2_39
22.9
M2_40
22.8
M2_41
22.7
M2_42
22.7
M2_43
22.6
M2_44
22.4
M2_45
22.2
M2_46
22.1
M2_47
22.1
M2_48
21.8
M2_49
21.7
M2_50
21.6
M2_51
21.5
M2_52
21.4
M2_53
21.3
M2_54
21.3
M2_55
21.3
M2_56
21.2
M2_57
21.2
M2_58
21.1
M2_59
20.3
M2_60
20.3
M2_61
20.0
M2_62
20.0
M2_63
19.9
M2_64
19.9
M2_65
19.8
M2_66
19.7
M2_67
19.6
M2_68
19.4
M2_69
19.4
M2_70
19.4
M2_71
19.2
M2_72
19.1
M2_73
19.0
M2_74
18.8
M2_75
18.4
M2_76
18.1
M2_77
17.8
M2_78
17.7
M2_79
17.6
M2_80
17.6
M2_81
16.9
M2_82
16.8
M2_83
16.7
M2_84
16.6
M2_85
16.3
M2_86
15.8
M2_87
15.5
M2_88
14.8
M2_89
14.7
M2_90
14.3
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