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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • EVOLUTION

  • CTNNA1
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:110.6 nTPM
GTEx:114.8 nTPM
FANTOM5:282.2 Scaled Tags Per Million
Macaque:56.2 nTPM
Pig:66.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.6
Sample id Sample description nTPM
Substantia nigra
nTPM: 110.6
2241 Male, age 72, unknown 126.4
2590 Female, age 75, unknown 118.7
1889 Female, age 72, unknown 116.1
2409 Female, age 72, unknown 115.5
2699 Male, age 18, unknown 113.9
2583 Male, age 75, right hemisphere 112.8
1851 Male, age 51, unknown 109.6
2665 Male, age 74, both hemispheres 106.0
1916 Female, age 42, unknown 95.8
1941 Male, age 53, unknown 91.3

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 114.8
Samples: 183

Max nTPM: 210.8
Min nTPM: 54.9
Std nTPM: 31.3
Median nTPM: 111.4
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 210.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 207.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 195.4
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 189.7
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 186.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 180.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 174.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 174.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 173.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 172.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 170.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 170.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 170.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 167.6
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 163.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 162.6
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 162.2
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 159.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 158.8
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 158.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 157.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 154.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 154.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 153.2
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 149.8
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 147.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 147.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 146.5
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 146.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 145.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 145.5
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 145.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 144.5
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 144.5
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 143.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 143.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 143.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 142.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 142.2
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 140.3
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 140.0
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 139.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 138.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 137.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 137.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 136.3
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 136.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 134.9
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 134.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 133.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 130.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 130.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 129.7
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 129.6
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 129.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 127.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 127.5
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 127.2
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 126.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 125.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 125.3
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 125.1
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 124.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 123.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 123.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 122.6
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 121.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 121.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 121.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 120.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 118.7
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 118.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 118.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 117.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 117.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 116.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 116.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 116.3
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 115.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 115.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 115.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 115.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 114.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 114.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 114.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 113.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 113.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 113.6
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 113.1
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 112.4
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 112.1
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 111.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 111.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 110.3
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 110.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 110.0
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 109.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 107.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 107.0
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 106.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 106.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 106.6
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 105.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 104.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 104.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 103.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 103.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 103.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 102.4
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 101.7
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 101.2
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 100.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 100.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 100.0
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 99.6
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 96.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 96.8
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 96.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 96.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 95.7
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 95.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 95.0
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 94.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 94.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 94.3
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 94.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 93.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 93.6
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 93.4
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 93.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 92.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 92.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 91.6
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 91.2
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 91.1
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 90.8
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 90.5
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 90.1
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 90.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 90.0
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 89.8
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 89.6
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 89.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 89.3
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 89.0
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 89.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 88.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 88.0
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 87.8
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 87.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 87.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 86.6
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 86.3
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 85.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 85.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 84.1
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 83.7
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 82.6
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 82.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 81.9
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 80.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 80.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 80.2
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 80.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 79.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 78.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 77.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 77.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 76.8
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 76.5
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 75.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 74.9
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 74.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 73.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 72.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 71.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 67.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 63.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 61.8
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 61.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 60.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 57.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 54.9
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

282.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 282.2
FF:10158-103A5 76 years, female 282.2

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.2
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 56.2
Samples: 1

Max nTPM: 56.2
Min nTPM: 56.2
Sample A 56.2

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.7
Samples: 3

Max nTPM: 73.5
Min nTPM: 56.5
Sample A Female 70.0
Sample B Female 73.5
Sample C Male 56.5

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