A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.4
nTPM
Monaco:
83.6
nTPM
Schmiedel:
125.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.4
HPA sample
nTPM
Memory B-cell nTPM: 6.4
Samples: 6
Max nTPM: 8.1
Min nTPM: 3.8
P10809_1017
6.9
P10809_1025
7.8
P10809_1044
4.6
P10809_1063
8.1
P10809_1092
7.1
P10809_1105
3.8
Naive B-cell nTPM: 5.5
Samples: 6
Max nTPM: 10.8
Min nTPM: 2.7
P10809_1011
2.7
P10809_1029
10.8
P10809_1048
3.8
P10809_1067
7.0
P10809_1091
4.4
P10809_1104
4.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
83.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 43.3
Samples: 4
Max nTPM: 61.3
Min nTPM: 19.0
RHH5310_R3677
19.0
RHH5218_R3590
61.3
RHH5247_R3619
45.3
RHH5276_R3648
47.5
Naive B-cell nTPM: 62.3
Samples: 4
Max nTPM: 79.3
Min nTPM: 52.3
RHH5308_R3675
55.3
RHH5216_R3588
52.3
RHH5245_R3617
79.3
RHH5274_R3646
62.2
Non-switched memory B-cell nTPM: 80.5
Samples: 4
Max nTPM: 109.7
Min nTPM: 39.5
RHH5309_R3676
39.5
RHH5217_R3589
106.5
RHH5246_R3618
66.3
RHH5275_R3647
109.7
Plasmablast nTPM: 83.6
Samples: 4
Max nTPM: 100.4
Min nTPM: 65.6
RHH5312_R3679
87.5
RHH5220_R3592
65.6
RHH5249_R3621
80.8
RHH5278_R3650
100.4
Switched memory B-cell nTPM: 65.0
Samples: 4
Max nTPM: 87.1
Min nTPM: 37.6
RHH5311_R3678
37.6
RHH5219_R3591
61.6
RHH5248_R3620
73.6
RHH5277_R3649
87.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
125.0
Schmiedel sample id
TPM
Naive B-cell TPM: 125.0
Samples: 91
Max TPM: 201.5
Min TPM: 82.3
B_CELL_NAIVE_1
201.5
B_CELL_NAIVE_2
192.2
B_CELL_NAIVE_3
190.5
B_CELL_NAIVE_4
182.1
B_CELL_NAIVE_5
178.8
B_CELL_NAIVE_6
175.8
B_CELL_NAIVE_7
164.3
B_CELL_NAIVE_8
159.1
B_CELL_NAIVE_9
155.2
B_CELL_NAIVE_10
150.1
B_CELL_NAIVE_11
147.4
B_CELL_NAIVE_12
145.0
B_CELL_NAIVE_13
144.9
B_CELL_NAIVE_14
144.1
B_CELL_NAIVE_15
138.4
B_CELL_NAIVE_16
138.0
B_CELL_NAIVE_17
136.6
B_CELL_NAIVE_18
135.5
B_CELL_NAIVE_19
135.2
B_CELL_NAIVE_20
135.0
B_CELL_NAIVE_21
134.4
B_CELL_NAIVE_22
133.7
B_CELL_NAIVE_23
132.8
B_CELL_NAIVE_24
131.9
B_CELL_NAIVE_25
131.6
B_CELL_NAIVE_26
131.5
B_CELL_NAIVE_27
131.4
B_CELL_NAIVE_28
130.4
B_CELL_NAIVE_29
130.3
B_CELL_NAIVE_30
130.3
B_CELL_NAIVE_31
130.2
B_CELL_NAIVE_32
128.5
B_CELL_NAIVE_33
128.5
B_CELL_NAIVE_34
127.4
B_CELL_NAIVE_35
126.8
B_CELL_NAIVE_36
126.7
B_CELL_NAIVE_37
126.5
B_CELL_NAIVE_38
125.7
B_CELL_NAIVE_39
124.8
B_CELL_NAIVE_40
124.7
B_CELL_NAIVE_41
124.3
B_CELL_NAIVE_42
124.1
B_CELL_NAIVE_43
123.1
B_CELL_NAIVE_44
122.4
B_CELL_NAIVE_45
121.7
B_CELL_NAIVE_46
121.7
B_CELL_NAIVE_47
121.6
B_CELL_NAIVE_48
120.7
B_CELL_NAIVE_49
120.4
B_CELL_NAIVE_50
120.1
B_CELL_NAIVE_51
119.9
B_CELL_NAIVE_52
119.2
B_CELL_NAIVE_53
118.9
B_CELL_NAIVE_54
118.5
B_CELL_NAIVE_55
118.3
B_CELL_NAIVE_56
118.1
B_CELL_NAIVE_57
116.6
B_CELL_NAIVE_58
116.5
B_CELL_NAIVE_59
115.4
B_CELL_NAIVE_60
114.9
B_CELL_NAIVE_61
114.0
B_CELL_NAIVE_62
114.0
B_CELL_NAIVE_63
113.5
B_CELL_NAIVE_64
113.3
B_CELL_NAIVE_65
113.1
B_CELL_NAIVE_66
113.1
B_CELL_NAIVE_67
111.3
B_CELL_NAIVE_68
111.1
B_CELL_NAIVE_69
111.0
B_CELL_NAIVE_70
110.5
B_CELL_NAIVE_71
110.1
B_CELL_NAIVE_72
110.0
B_CELL_NAIVE_73
109.8
B_CELL_NAIVE_74
109.0
B_CELL_NAIVE_75
108.9
B_CELL_NAIVE_76
108.6
B_CELL_NAIVE_77
106.1
B_CELL_NAIVE_78
105.4
B_CELL_NAIVE_79
105.0
B_CELL_NAIVE_80
103.7
B_CELL_NAIVE_81
102.3
B_CELL_NAIVE_82
100.2
B_CELL_NAIVE_83
98.7
B_CELL_NAIVE_84
98.1
B_CELL_NAIVE_85
97.7
B_CELL_NAIVE_86
96.4
B_CELL_NAIVE_87
95.2
B_CELL_NAIVE_88
94.7
B_CELL_NAIVE_89
91.5
B_CELL_NAIVE_90
82.9
B_CELL_NAIVE_91
82.3
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The Human Protein Atlas project is funded
