BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:557.2 nTPM
HPA Brain:721.3 nTPM
GTEx:557.2 nTPM
FANTOM5:575.4 Scaled Tags Per Million
Macaque:250.9 nTPM
Mouse:291.6 nTPM
Pig:262.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 721.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 682.2
2666 Male, age 74, left hemisphere 908.7
2586 Male, age 75, left hemisphere 894.2
2019 Male, age 18, unknown 857.9
2828 Female, age 72, unknown 694.1
1827 Male, age 72, unknown 658.3
1833 Male, age 53, unknown 611.1
1830 Male, age 51, unknown 597.8
2411 Female, age 72, unknown 591.4
1870 Female, age 42, unknown 544.9
2219 Male, age 76, both hemispheres 463.9
Dorsal raphe nucleus
nTPM: 526.4
2750 Male, age 76, both hemispheres 624.8
1828 Male, age 53, unknown 547.0
2016 Female, age 72, unknown 521.9
2047 Male, age 72, unknown 491.6
2298 Female, age 72, unknown 446.9
Inferior colliculus
nTPM: 467.4
1890 Male, age 53, unknown 520.5
1848 Female, age 42, unknown 475.1
2849 Male, age 72, unknown 467.8
2097 Female, age 72, unknown 406.1
Median raphe nucleus
nTPM: 570.6
2220 Male, age 76, midline 570.6
Periaquaductal grey, anterior
nTPM: 559.3
2502 Female, age 75, unknown 618.5
1795 Male, age 51, unknown 550.1
1947 Male, age 18, unknown 509.3
Periaquaductal grey, dorsal
nTPM: 489.7
2850 Male, age 76, both hemispheres 545.2
1831 Male, age 72, unknown 514.9
2464 Female, age 72, unknown 501.0
1840 Male, age 53, unknown 397.6
Periaquaductal grey, lateral
nTPM: 480.1
2140 Male, age 76, both hemispheres 503.5
2053 Male, age 18, unknown 485.6
2272 Male, age 74, both hemispheres 451.3
Pretectal area
nTPM: 640.0
2007 Male, age 72, unknown 890.0
1816 Male, age 51, unknown 861.3
1815 Male, age 53, unknown 858.8
1817 Female, age 42, unknown 785.9
1944 Female, age 72, unknown 777.0
2407 Male, age 75, both hemispheres 576.7
2316 Male, age 76, right hemisphere 499.9
2825 Male, age 18, unknown 477.6
2667 Female, age 75, unknown 469.5
2224 Female, age 72, unknown 428.7
2273 Male, age 74, both hemispheres 414.7
Red nucleus
nTPM: 721.3
2588 Male, age 74, left hemisphere 1001.6
2785 Male, age 18, unknown 840.4
2503 Female, age 72, unknown 798.4
2584 Male, age 75, left hemisphere 750.9
1865 Male, age 51, unknown 715.0
1904 Male, age 53, unknown 710.9
2725 Female, age 75, unknown 700.3
1821 Female, age 72, unknown 668.0
2823 Male, age 76, right hemisphere 631.3
1954 Female, age 42, unknown 616.1
2769 Male, age 72, unknown 613.2
2227 Male, age 72, unknown 609.7
Substantia nigra
nTPM: 639.3
2665 Male, age 74, both hemispheres 766.4
1889 Female, age 72, unknown 702.6
1916 Female, age 42, unknown 670.5
2583 Male, age 75, right hemisphere 670.4
2590 Female, age 75, unknown 657.3
1851 Male, age 51, unknown 643.2
2241 Male, age 72, unknown 591.2
1941 Male, age 53, unknown 580.6
2699 Male, age 18, unknown 562.2
2409 Female, age 72, unknown 549.0
Superior colliculus
nTPM: 629.9
2668 Female, age 75, unknown 726.2
2664 Male, age 75, both hemispheres 692.1
2587 Male, age 74, left hemisphere 684.2
2087 Female, age 72, unknown 672.8
2261 Male, age 18, unknown 648.4
1995 Male, age 72, unknown 639.9
1913 Female, age 42, unknown 621.1
1796 Male, age 53, unknown 597.5
1839 Male, age 51, unknown 551.0
1895 Male, age 76, right hemisphere 465.3
Ventral tegmental area
nTPM: 563.8
2410 Female, age 72, unknown 630.3
2223 Female, age 72, unknown 596.1
2218 Male, age 76, both hemispheres 582.4
1915 Female, age 42, unknown 539.6
2021 Male, age 53, unknown 527.5
1942 Male, age 51, unknown 507.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 557.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 557.2
Samples: 183

Max nTPM: 1700.9
Min nTPM: 152.7
Std nTPM: 257.9
Median nTPM: 488.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1700.9
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1314.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1286.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1194.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1152.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1115.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1109.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1103.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1091.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1091.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1071.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 575.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 575.4
FF:10158-103A5 76 years, female 575.4

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 250.9
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 210.6
Samples: 1

Max nTPM: 210.6
Min nTPM: 210.6
Sample A 210.6
Midbrain
nTPM: 188.5
Samples: 1

Max nTPM: 188.5
Min nTPM: 188.5
Sample A 188.5
Superior colliculi
nTPM: 250.9
Samples: 1

Max nTPM: 250.9
Min nTPM: 250.9
Sample A 250.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 262.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 162.8
Samples: 3

Max nTPM: 174.1
Min nTPM: 154.7
Sample A Female 174.1
Sample B Female 154.7
Sample C Male 159.6
Midbrain
nTPM: 262.7
Samples: 3

Max nTPM: 470.6
Min nTPM: 141.1
Sample B Female 141.1
Sample C Male 470.6
Sample D Male 176.3
Periaqueductal gray
nTPM: 134.9
Samples: 3

Max nTPM: 140.9
Min nTPM: 128.7
Sample B Female 135.0
Sample C Male 140.9
Sample D Male 128.7
Superior colliculi
nTPM: 255.5
Samples: 4

Max nTPM: 377.7
Min nTPM: 184.5
Sample A Female 215.8
Sample B Female 184.5
Sample C Male 377.7
Sample D Male 243.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 291.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 291.6
Samples: 4

Max nTPM: 294.7
Min nTPM: 288.8
Sample A 288.8
Sample B 289.6
Sample C 293.4
Sample D 294.7

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