A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
27.5
nTPM
Monaco:
142.2
nTPM
Schmiedel:
46.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.5
HPA sample
nTPM
Classical monocyte nTPM: 6.6
Samples: 6
Max nTPM: 9.5
Min nTPM: 4.8
P10809_1003
9.5
P10809_1020
6.0
P10809_1039
4.8
P10809_1058
7.8
P10809_1080
6.3
P10809_1107
5.2
Intermediate monocyte nTPM: 10.6
Samples: 6
Max nTPM: 20.6
Min nTPM: 3.4
P10809_1004
12.2
P10809_1023
3.4
P10809_1042
7.8
P10809_1061
20.6
P10809_1081
11.6
P10809_1108
7.8
Non-classical monocyte nTPM: 27.5
Samples: 5
Max nTPM: 83.3
Min nTPM: 10.7
P10809_1005
12.7
P10809_1053
17.9
P10809_1072
83.3
P10809_1082
12.7
P10809_1109
10.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
142.2
Monaco sample
nTPM
Classical monocyte nTPM: 78.6
Samples: 4
Max nTPM: 106.1
Min nTPM: 68.1
RHH5313_R3680
68.1
RHH5221_R3593
68.6
RHH5250_R3622
106.1
RHH5279_R3651
71.6
Intermediate monocyte nTPM: 119.1
Samples: 4
Max nTPM: 136.5
Min nTPM: 109.7
RHH5314_R3681
109.7
RHH5222_R3594
112.7
RHH5251_R3623
117.5
RHH5280_R3652
136.5
Non-classical monocyte nTPM: 142.2
Samples: 4
Max nTPM: 185.4
Min nTPM: 119.8
RHH5315_R3682
122.2
RHH5223_R3595
119.8
RHH5252_R3624
141.4
RHH5281_R3653
185.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.1
Schmiedel sample id
TPM
Classical monocyte TPM: 20.3
Samples: 91
Max TPM: 25.8
Min TPM: 14.8
MONOCYTES_1
25.8
MONOCYTES_2
25.2
MONOCYTES_3
24.4
MONOCYTES_4
24.3
MONOCYTES_5
23.9
MONOCYTES_6
23.7
MONOCYTES_7
23.6
MONOCYTES_8
23.6
MONOCYTES_9
23.5
MONOCYTES_10
23.4
MONOCYTES_11
23.1
MONOCYTES_12
22.9
MONOCYTES_13
22.8
MONOCYTES_14
22.8
MONOCYTES_15
22.6
MONOCYTES_16
22.4
MONOCYTES_17
22.3
MONOCYTES_18
22.2
MONOCYTES_19
22.2
MONOCYTES_20
22.1
MONOCYTES_21
22.1
MONOCYTES_22
22.0
MONOCYTES_23
21.9
MONOCYTES_24
21.9
MONOCYTES_25
21.7
MONOCYTES_26
21.6
MONOCYTES_27
21.5
MONOCYTES_28
21.3
MONOCYTES_29
21.3
MONOCYTES_30
21.3
MONOCYTES_31
21.2
MONOCYTES_32
21.1
MONOCYTES_33
21.1
MONOCYTES_34
21.1
MONOCYTES_35
21.0
MONOCYTES_36
20.8
MONOCYTES_37
20.6
MONOCYTES_38
20.5
MONOCYTES_39
20.5
MONOCYTES_40
20.5
MONOCYTES_41
20.4
MONOCYTES_42
20.4
MONOCYTES_43
20.3
MONOCYTES_44
20.2
MONOCYTES_45
20.1
MONOCYTES_46
20.0
MONOCYTES_47
19.9
MONOCYTES_48
19.8
MONOCYTES_49
19.8
MONOCYTES_50
19.8
MONOCYTES_51
19.7
MONOCYTES_52
19.7
MONOCYTES_53
19.7
MONOCYTES_54
19.6
MONOCYTES_55
19.6
MONOCYTES_56
19.5
MONOCYTES_57
19.4
MONOCYTES_58
19.4
MONOCYTES_59
19.3
MONOCYTES_60
19.3
MONOCYTES_61
19.2
MONOCYTES_62
19.2
MONOCYTES_63
19.2
MONOCYTES_64
19.1
MONOCYTES_65
19.1
MONOCYTES_66
19.1
MONOCYTES_67
19.0
MONOCYTES_68
19.0
MONOCYTES_69
19.0
MONOCYTES_70
18.8
MONOCYTES_71
18.7
MONOCYTES_72
18.4
MONOCYTES_73
18.3
MONOCYTES_74
18.3
MONOCYTES_75
18.1
MONOCYTES_76
18.1
MONOCYTES_77
17.9
MONOCYTES_78
17.7
MONOCYTES_79
17.6
MONOCYTES_80
17.5
MONOCYTES_81
17.5
MONOCYTES_82
17.5
MONOCYTES_83
17.4
MONOCYTES_84
17.2
MONOCYTES_85
16.9
MONOCYTES_86
16.9
MONOCYTES_87
16.7
MONOCYTES_88
16.7
MONOCYTES_89
16.3
MONOCYTES_90
16.3
MONOCYTES_91
14.8
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Non-classical monocyte TPM: 46.1
Samples: 90
Max TPM: 61.8
Min TPM: 37.1
M2_1
61.8
M2_2
58.3
M2_3
53.9
M2_4
52.8
M2_5
52.6
M2_6
52.4
M2_7
51.3
M2_8
51.2
M2_9
50.6
M2_10
50.3
M2_11
50.2
M2_12
50.0
M2_13
49.9
M2_14
49.9
M2_15
49.5
M2_16
49.4
M2_17
49.4
M2_18
49.3
M2_19
49.1
M2_20
48.8
M2_21
48.6
M2_22
48.5
M2_23
48.4
M2_24
48.1
M2_25
48.1
M2_26
48.1
M2_27
48.0
M2_28
47.9
M2_29
47.9
M2_30
47.7
M2_31
47.7
M2_32
47.6
M2_33
47.5
M2_34
47.5
M2_35
47.5
M2_36
47.2
M2_37
47.1
M2_38
47.1
M2_39
47.0
M2_40
47.0
M2_41
47.0
M2_42
47.0
M2_43
46.9
M2_44
46.7
M2_45
46.4
M2_46
46.4
M2_47
46.4
M2_48
46.3
M2_49
45.6
M2_50
45.6
M2_51
45.5
M2_52
45.5
M2_53
45.4
M2_54
45.3
M2_55
45.0
M2_56
44.9
M2_57
44.9
M2_58
44.6
M2_59
44.6
M2_60
44.4
M2_61
44.2
M2_62
44.2
M2_63
44.2
M2_64
43.9
M2_65
43.6
M2_66
43.3
M2_67
43.3
M2_68
43.2
M2_69
43.1
M2_70
42.4
M2_71
42.3
M2_72
42.3
M2_73
41.9
M2_74
41.9
M2_75
41.9
M2_76
41.6
M2_77
41.6
M2_78
41.4
M2_79
41.4
M2_80
41.3
M2_81
41.2
M2_82
41.0
M2_83
40.6
M2_84
40.4
M2_85
40.4
M2_86
40.3
M2_87
39.3
M2_88
39.2
M2_89
39.0
M2_90
37.1
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