A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.7
nTPM
Monaco:
35.0
nTPM
Schmiedel:
42.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.7
HPA sample
nTPM
Classical monocyte nTPM: 4.2
Samples: 6
Max nTPM: 5.3
Min nTPM: 2.6
P10809_1003
4.3
P10809_1020
3.9
P10809_1039
5.1
P10809_1058
4.0
P10809_1080
2.6
P10809_1107
5.3
Intermediate monocyte nTPM: 3.9
Samples: 6
Max nTPM: 7.2
Min nTPM: 1.0
P10809_1004
4.6
P10809_1023
2.2
P10809_1042
7.2
P10809_1061
1.0
P10809_1081
2.2
P10809_1108
6.3
Non-classical monocyte nTPM: 4.7
Samples: 5
Max nTPM: 7.0
Min nTPM: 0.1
P10809_1005
5.6
P10809_1053
4.4
P10809_1072
0.1
P10809_1082
7.0
P10809_1109
6.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.0
Monaco sample
nTPM
Classical monocyte nTPM: 23.2
Samples: 4
Max nTPM: 27.1
Min nTPM: 19.1
RHH5313_R3680
20.2
RHH5221_R3593
19.1
RHH5250_R3622
26.4
RHH5279_R3651
27.1
Intermediate monocyte nTPM: 24.3
Samples: 4
Max nTPM: 29.0
Min nTPM: 21.4
RHH5314_R3681
23.9
RHH5222_R3594
21.4
RHH5251_R3623
29.0
RHH5280_R3652
22.9
Non-classical monocyte nTPM: 35.0
Samples: 4
Max nTPM: 44.7
Min nTPM: 30.1
RHH5315_R3682
31.8
RHH5223_R3595
44.7
RHH5252_R3624
33.2
RHH5281_R3653
30.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.8
Schmiedel sample id
TPM
Classical monocyte TPM: 19.5
Samples: 91
Max TPM: 30.3
Min TPM: 12.5
MONOCYTES_1
30.3
MONOCYTES_2
25.4
MONOCYTES_3
25.2
MONOCYTES_4
25.1
MONOCYTES_5
25.0
MONOCYTES_6
24.9
MONOCYTES_7
24.7
MONOCYTES_8
24.3
MONOCYTES_9
24.2
MONOCYTES_10
24.0
MONOCYTES_11
24.0
MONOCYTES_12
23.9
MONOCYTES_13
23.9
MONOCYTES_14
23.8
MONOCYTES_15
23.8
MONOCYTES_16
23.8
MONOCYTES_17
23.4
MONOCYTES_18
23.1
MONOCYTES_19
23.1
MONOCYTES_20
22.9
MONOCYTES_21
22.9
MONOCYTES_22
22.7
MONOCYTES_23
22.7
MONOCYTES_24
22.7
MONOCYTES_25
22.5
MONOCYTES_26
22.1
MONOCYTES_27
21.9
MONOCYTES_28
21.7
MONOCYTES_29
21.6
MONOCYTES_30
21.6
MONOCYTES_31
21.3
MONOCYTES_32
21.2
MONOCYTES_33
21.0
MONOCYTES_34
21.0
MONOCYTES_35
20.9
MONOCYTES_36
20.8
MONOCYTES_37
20.6
MONOCYTES_38
20.4
MONOCYTES_39
20.4
MONOCYTES_40
20.0
MONOCYTES_41
19.9
MONOCYTES_42
19.8
MONOCYTES_43
19.7
MONOCYTES_44
19.6
MONOCYTES_45
19.3
MONOCYTES_46
19.2
MONOCYTES_47
19.1
MONOCYTES_48
19.0
MONOCYTES_49
18.9
MONOCYTES_50
18.9
MONOCYTES_51
18.8
MONOCYTES_52
18.6
MONOCYTES_53
18.6
MONOCYTES_54
18.4
MONOCYTES_55
18.4
MONOCYTES_56
18.3
MONOCYTES_57
18.3
MONOCYTES_58
17.9
MONOCYTES_59
17.9
MONOCYTES_60
17.9
MONOCYTES_61
17.7
MONOCYTES_62
17.6
MONOCYTES_63
17.5
MONOCYTES_64
17.3
MONOCYTES_65
17.2
MONOCYTES_66
17.1
MONOCYTES_67
17.0
MONOCYTES_68
17.0
MONOCYTES_69
16.9
MONOCYTES_70
16.8
MONOCYTES_71
16.8
MONOCYTES_72
16.4
MONOCYTES_73
16.2
MONOCYTES_74
16.2
MONOCYTES_75
15.8
MONOCYTES_76
15.2
MONOCYTES_77
15.2
MONOCYTES_78
15.1
MONOCYTES_79
15.1
MONOCYTES_80
14.9
MONOCYTES_81
14.9
MONOCYTES_82
14.8
MONOCYTES_83
14.4
MONOCYTES_84
14.4
MONOCYTES_85
14.3
MONOCYTES_86
14.3
MONOCYTES_87
13.7
MONOCYTES_88
13.0
MONOCYTES_89
12.9
MONOCYTES_90
12.5
MONOCYTES_91
12.5
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Non-classical monocyte TPM: 42.8
Samples: 90
Max TPM: 66.1
Min TPM: 25.6
M2_1
66.1
M2_2
59.7
M2_3
59.1
M2_4
58.7
M2_5
58.7
M2_6
57.5
M2_7
56.2
M2_8
54.5
M2_9
54.4
M2_10
53.4
M2_11
52.2
M2_12
52.2
M2_13
52.1
M2_14
52.1
M2_15
51.4
M2_16
51.2
M2_17
50.9
M2_18
49.3
M2_19
48.1
M2_20
48.0
M2_21
47.4
M2_22
47.1
M2_23
47.0
M2_24
46.7
M2_25
46.4
M2_26
46.2
M2_27
46.1
M2_28
45.6
M2_29
45.4
M2_30
45.3
M2_31
45.1
M2_32
44.6
M2_33
44.3
M2_34
44.2
M2_35
44.1
M2_36
43.9
M2_37
43.8
M2_38
43.3
M2_39
43.0
M2_40
42.8
M2_41
42.3
M2_42
42.2
M2_43
42.0
M2_44
41.9
M2_45
41.7
M2_46
41.4
M2_47
41.4
M2_48
41.2
M2_49
41.1
M2_50
41.0
M2_51
40.5
M2_52
40.0
M2_53
39.9
M2_54
39.7
M2_55
39.5
M2_56
39.4
M2_57
39.4
M2_58
39.2
M2_59
39.1
M2_60
39.0
M2_61
39.0
M2_62
38.9
M2_63
38.1
M2_64
38.0
M2_65
37.6
M2_66
37.4
M2_67
37.2
M2_68
37.1
M2_69
37.1
M2_70
37.1
M2_71
37.1
M2_72
37.0
M2_73
36.1
M2_74
35.9
M2_75
35.8
M2_76
35.7
M2_77
35.5
M2_78
35.5
M2_79
35.1
M2_80
34.5
M2_81
34.1
M2_82
34.0
M2_83
33.8
M2_84
33.4
M2_85
32.6
M2_86
32.5
M2_87
32.4
M2_88
32.0
M2_89
28.5
M2_90
25.6
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