A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
30.3
nTPM
Monaco:
76.7
nTPM
Schmiedel:
61.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.3
HPA sample
nTPM
Classical monocyte nTPM: 26.0
Samples: 6
Max nTPM: 31.1
Min nTPM: 22.6
P10809_1003
25.3
P10809_1020
24.7
P10809_1039
31.1
P10809_1058
22.6
P10809_1080
26.9
P10809_1107
25.2
Intermediate monocyte nTPM: 30.4
Samples: 6
Max nTPM: 34.6
Min nTPM: 27.3
P10809_1004
30.3
P10809_1023
27.3
P10809_1042
28.9
P10809_1061
34.6
P10809_1081
29.3
P10809_1108
31.8
Non-classical monocyte nTPM: 28.8
Samples: 5
Max nTPM: 37.7
Min nTPM: 12.8
P10809_1005
32.0
P10809_1053
30.5
P10809_1072
12.8
P10809_1082
31.0
P10809_1109
37.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.7
Monaco sample
nTPM
Classical monocyte nTPM: 62.9
Samples: 4
Max nTPM: 79.1
Min nTPM: 39.0
RHH5313_R3680
67.9
RHH5221_R3593
65.6
RHH5250_R3622
79.1
RHH5279_R3651
39.0
Intermediate monocyte nTPM: 67.5
Samples: 4
Max nTPM: 85.1
Min nTPM: 52.9
RHH5314_R3681
64.7
RHH5222_R3594
85.1
RHH5251_R3623
67.2
RHH5280_R3652
52.9
Non-classical monocyte nTPM: 76.7
Samples: 4
Max nTPM: 85.2
Min nTPM: 68.5
RHH5315_R3682
73.2
RHH5223_R3595
80.0
RHH5252_R3624
85.2
RHH5281_R3653
68.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.4
Schmiedel sample id
TPM
Classical monocyte TPM: 30.3
Samples: 91
Max TPM: 44.5
Min TPM: 19.2
MONOCYTES_1
44.5
MONOCYTES_2
41.4
MONOCYTES_3
41.4
MONOCYTES_4
40.6
MONOCYTES_5
39.9
MONOCYTES_6
39.7
MONOCYTES_7
39.5
MONOCYTES_8
38.9
MONOCYTES_9
38.6
MONOCYTES_10
38.4
MONOCYTES_11
37.8
MONOCYTES_12
37.7
MONOCYTES_13
37.1
MONOCYTES_14
37.0
MONOCYTES_15
37.0
MONOCYTES_16
36.8
MONOCYTES_17
36.6
MONOCYTES_18
36.4
MONOCYTES_19
35.7
MONOCYTES_20
35.4
MONOCYTES_21
34.8
MONOCYTES_22
34.7
MONOCYTES_23
34.6
MONOCYTES_24
33.8
MONOCYTES_25
33.7
MONOCYTES_26
33.5
MONOCYTES_27
33.4
MONOCYTES_28
33.2
MONOCYTES_29
32.9
MONOCYTES_30
32.4
MONOCYTES_31
32.3
MONOCYTES_32
32.3
MONOCYTES_33
32.0
MONOCYTES_34
31.8
MONOCYTES_35
31.6
MONOCYTES_36
31.5
MONOCYTES_37
31.5
MONOCYTES_38
31.4
MONOCYTES_39
31.3
MONOCYTES_40
31.0
MONOCYTES_41
30.9
MONOCYTES_42
30.5
MONOCYTES_43
30.5
MONOCYTES_44
30.0
MONOCYTES_45
30.0
MONOCYTES_46
29.9
MONOCYTES_47
29.7
MONOCYTES_48
29.2
MONOCYTES_49
29.2
MONOCYTES_50
29.0
MONOCYTES_51
28.9
MONOCYTES_52
28.9
MONOCYTES_53
28.7
MONOCYTES_54
28.4
MONOCYTES_55
28.4
MONOCYTES_56
28.2
MONOCYTES_57
28.2
MONOCYTES_58
27.7
MONOCYTES_59
27.7
MONOCYTES_60
27.7
MONOCYTES_61
27.4
MONOCYTES_62
27.2
MONOCYTES_63
27.1
MONOCYTES_64
26.7
MONOCYTES_65
26.6
MONOCYTES_66
26.5
MONOCYTES_67
26.4
MONOCYTES_68
26.1
MONOCYTES_69
25.9
MONOCYTES_70
25.8
MONOCYTES_71
25.6
MONOCYTES_72
25.3
MONOCYTES_73
25.3
MONOCYTES_74
24.7
MONOCYTES_75
24.6
MONOCYTES_76
24.5
MONOCYTES_77
24.4
MONOCYTES_78
24.3
MONOCYTES_79
24.3
MONOCYTES_80
24.0
MONOCYTES_81
23.9
MONOCYTES_82
23.7
MONOCYTES_83
23.3
MONOCYTES_84
23.2
MONOCYTES_85
22.8
MONOCYTES_86
22.0
MONOCYTES_87
21.9
MONOCYTES_88
21.7
MONOCYTES_89
20.5
MONOCYTES_90
19.5
MONOCYTES_91
19.2
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Non-classical monocyte TPM: 61.4
Samples: 90
Max TPM: 92.3
Min TPM: 41.5
M2_1
92.3
M2_2
80.9
M2_3
79.2
M2_4
76.2
M2_5
75.9
M2_6
75.9
M2_7
75.8
M2_8
75.5
M2_9
73.2
M2_10
73.0
M2_11
72.6
M2_12
71.7
M2_13
70.8
M2_14
70.3
M2_15
70.1
M2_16
69.7
M2_17
69.6
M2_18
68.5
M2_19
68.0
M2_20
67.5
M2_21
67.5
M2_22
67.4
M2_23
67.1
M2_24
65.7
M2_25
65.6
M2_26
65.6
M2_27
65.1
M2_28
65.1
M2_29
65.1
M2_30
64.8
M2_31
64.6
M2_32
64.2
M2_33
64.0
M2_34
63.6
M2_35
63.3
M2_36
62.7
M2_37
62.6
M2_38
62.3
M2_39
62.2
M2_40
61.9
M2_41
61.9
M2_42
61.7
M2_43
61.6
M2_44
61.6
M2_45
61.3
M2_46
61.3
M2_47
60.6
M2_48
60.3
M2_49
60.2
M2_50
60.2
M2_51
60.1
M2_52
60.1
M2_53
60.1
M2_54
60.0
M2_55
59.5
M2_56
59.5
M2_57
58.8
M2_58
58.7
M2_59
58.2
M2_60
57.5
M2_61
57.2
M2_62
56.5
M2_63
56.5
M2_64
56.1
M2_65
55.6
M2_66
55.3
M2_67
55.3
M2_68
55.3
M2_69
55.2
M2_70
54.6
M2_71
54.5
M2_72
53.4
M2_73
52.9
M2_74
52.8
M2_75
52.6
M2_76
52.5
M2_77
52.5
M2_78
51.5
M2_79
51.2
M2_80
51.1
M2_81
50.7
M2_82
50.6
M2_83
49.5
M2_84
49.0
M2_85
48.6
M2_86
47.8
M2_87
44.6
M2_88
43.7
M2_89
43.2
M2_90
41.5
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