A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.1
nTPM
Monaco:
85.1
nTPM
Schmiedel:
36.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.1
HPA sample
nTPM
NK-cell nTPM: 6.1
Samples: 6
Max nTPM: 10.2
Min nTPM: 2.7
P10809_1013
4.1
P10809_1033
10.2
P10809_1052
6.7
P10809_1071
2.7
P10809_1093
4.8
P10809_1103
7.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.1
Monaco sample
nTPM
NK-cell nTPM: 85.1
Samples: 4
Max nTPM: 167.3
Min nTPM: 7.8
RHH5316_R3683
157.3
RHH5224_R3596
7.9
RHH5253_R3625
7.8
RHH5282_R3654
167.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.3
Schmiedel sample id
TPM
NK-cell TPM: 36.3
Samples: 90
Max TPM: 190.9
Min TPM: 2.4
NK_1
190.9
NK_2
160.0
NK_3
159.1
NK_4
153.6
NK_5
145.7
NK_6
132.5
NK_7
116.1
NK_8
110.4
NK_9
107.9
NK_10
107.3
NK_11
93.3
NK_12
91.9
NK_13
90.2
NK_14
88.1
NK_15
86.4
NK_16
84.5
NK_17
81.0
NK_18
75.0
NK_19
74.3
NK_20
73.4
NK_21
72.9
NK_22
72.6
NK_23
69.7
NK_24
64.3
NK_25
59.7
NK_26
59.1
NK_27
56.7
NK_28
22.7
NK_29
19.9
NK_30
19.0
NK_31
17.5
NK_32
15.1
NK_33
15.0
NK_34
14.9
NK_35
14.6
NK_36
14.5
NK_37
14.2
NK_38
13.7
NK_39
13.6
NK_40
13.6
NK_41
12.8
NK_42
12.3
NK_43
12.1
NK_44
11.9
NK_45
11.9
NK_46
11.7
NK_47
11.6
NK_48
10.9
NK_49
10.7
NK_50
10.4
NK_51
10.3
NK_52
10.3
NK_53
10.1
NK_54
10.0
NK_55
9.9
NK_56
9.7
NK_57
9.5
NK_58
9.4
NK_59
9.1
NK_60
8.7
NK_61
8.5
NK_62
8.3
NK_63
8.1
NK_64
8.0
NK_65
7.9
NK_66
7.2
NK_67
7.0
NK_68
6.7
NK_69
6.7
NK_70
6.6
NK_71
6.2
NK_72
6.1
NK_73
5.8
NK_74
5.8
NK_75
5.6
NK_76
5.6
NK_77
5.5
NK_78
5.3
NK_79
5.3
NK_80
5.1
NK_81
4.9
NK_82
4.4
NK_83
4.2
NK_84
3.6
NK_85
3.6
NK_86
3.6
NK_87
3.2
NK_88
2.7
NK_89
2.5
NK_90
2.4
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
