A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.3
nTPM
Monaco:
55.4
nTPM
Schmiedel:
13.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.3
HPA sample
nTPM
Classical monocyte nTPM: 13.6
Samples: 6
Max nTPM: 17.2
Min nTPM: 11.2
P10809_1003
17.2
P10809_1020
14.9
P10809_1039
11.5
P10809_1058
11.2
P10809_1080
13.3
P10809_1107
13.4
Intermediate monocyte nTPM: 16.3
Samples: 6
Max nTPM: 20.9
Min nTPM: 11.4
P10809_1004
14.6
P10809_1023
18.4
P10809_1042
11.4
P10809_1061
19.1
P10809_1081
13.1
P10809_1108
20.9
Non-classical monocyte nTPM: 10.3
Samples: 5
Max nTPM: 14.5
Min nTPM: 5.8
P10809_1005
14.5
P10809_1053
5.8
P10809_1072
11.0
P10809_1082
8.2
P10809_1109
12.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.4
Monaco sample
nTPM
Classical monocyte nTPM: 55.4
Samples: 4
Max nTPM: 104.4
Min nTPM: 35.3
RHH5313_R3680
35.3
RHH5221_R3593
104.4
RHH5250_R3622
44.3
RHH5279_R3651
37.5
Intermediate monocyte nTPM: 45.4
Samples: 4
Max nTPM: 53.7
Min nTPM: 38.5
RHH5314_R3681
44.8
RHH5222_R3594
53.7
RHH5251_R3623
38.5
RHH5280_R3652
44.6
Non-classical monocyte nTPM: 30.7
Samples: 4
Max nTPM: 40.5
Min nTPM: 21.6
RHH5315_R3682
28.5
RHH5223_R3595
32.1
RHH5252_R3624
40.5
RHH5281_R3653
21.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.7
Schmiedel sample id
TPM
Classical monocyte TPM: 13.7
Samples: 91
Max TPM: 19.8
Min TPM: 7.8
MONOCYTES_1
19.8
MONOCYTES_2
19.1
MONOCYTES_3
18.8
MONOCYTES_4
17.7
MONOCYTES_5
17.5
MONOCYTES_6
17.2
MONOCYTES_7
17.2
MONOCYTES_8
17.1
MONOCYTES_9
16.7
MONOCYTES_10
16.4
MONOCYTES_11
16.0
MONOCYTES_12
15.9
MONOCYTES_13
15.8
MONOCYTES_14
15.8
MONOCYTES_15
15.7
MONOCYTES_16
15.6
MONOCYTES_17
15.6
MONOCYTES_18
15.5
MONOCYTES_19
15.5
MONOCYTES_20
15.4
MONOCYTES_21
15.4
MONOCYTES_22
15.4
MONOCYTES_23
15.2
MONOCYTES_24
15.0
MONOCYTES_25
14.9
MONOCYTES_26
14.7
MONOCYTES_27
14.7
MONOCYTES_28
14.6
MONOCYTES_29
14.5
MONOCYTES_30
14.5
MONOCYTES_31
14.4
MONOCYTES_32
14.4
MONOCYTES_33
14.4
MONOCYTES_34
14.3
MONOCYTES_35
14.3
MONOCYTES_36
14.3
MONOCYTES_37
14.3
MONOCYTES_38
14.3
MONOCYTES_39
14.3
MONOCYTES_40
14.2
MONOCYTES_41
14.1
MONOCYTES_42
14.1
MONOCYTES_43
14.0
MONOCYTES_44
14.0
MONOCYTES_45
14.0
MONOCYTES_46
13.9
MONOCYTES_47
13.9
MONOCYTES_48
13.6
MONOCYTES_49
13.6
MONOCYTES_50
13.6
MONOCYTES_51
13.4
MONOCYTES_52
13.3
MONOCYTES_53
13.2
MONOCYTES_54
13.2
MONOCYTES_55
13.0
MONOCYTES_56
13.0
MONOCYTES_57
12.9
MONOCYTES_58
12.9
MONOCYTES_59
12.9
MONOCYTES_60
12.9
MONOCYTES_61
12.8
MONOCYTES_62
12.8
MONOCYTES_63
12.7
MONOCYTES_64
12.6
MONOCYTES_65
12.6
MONOCYTES_66
12.6
MONOCYTES_67
12.5
MONOCYTES_68
12.3
MONOCYTES_69
12.2
MONOCYTES_70
12.2
MONOCYTES_71
12.0
MONOCYTES_72
12.0
MONOCYTES_73
11.9
MONOCYTES_74
11.9
MONOCYTES_75
11.9
MONOCYTES_76
11.8
MONOCYTES_77
11.7
MONOCYTES_78
11.7
MONOCYTES_79
11.6
MONOCYTES_80
11.6
MONOCYTES_81
11.4
MONOCYTES_82
11.3
MONOCYTES_83
10.8
MONOCYTES_84
10.8
MONOCYTES_85
10.6
MONOCYTES_86
10.3
MONOCYTES_87
9.8
MONOCYTES_88
9.1
MONOCYTES_89
9.0
MONOCYTES_90
8.7
MONOCYTES_91
7.8
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Non-classical monocyte TPM: 8.2
Samples: 90
Max TPM: 14.7
Min TPM: 4.9
M2_1
14.7
M2_2
13.1
M2_3
12.3
M2_4
11.7
M2_5
10.9
M2_6
10.9
M2_7
10.9
M2_8
10.8
M2_9
10.8
M2_10
10.8
M2_11
10.8
M2_12
10.7
M2_13
10.7
M2_14
10.7
M2_15
10.7
M2_16
10.4
M2_17
10.2
M2_18
9.9
M2_19
9.7
M2_20
9.6
M2_21
9.6
M2_22
9.4
M2_23
9.3
M2_24
9.2
M2_25
9.1
M2_26
9.0
M2_27
9.0
M2_28
9.0
M2_29
8.9
M2_30
8.9
M2_31
8.7
M2_32
8.7
M2_33
8.6
M2_34
8.5
M2_35
8.5
M2_36
8.5
M2_37
8.5
M2_38
8.4
M2_39
8.4
M2_40
8.3
M2_41
8.3
M2_42
8.3
M2_43
8.2
M2_44
8.1
M2_45
7.9
M2_46
7.8
M2_47
7.8
M2_48
7.7
M2_49
7.7
M2_50
7.7
M2_51
7.7
M2_52
7.7
M2_53
7.7
M2_54
7.6
M2_55
7.6
M2_56
7.5
M2_57
7.5
M2_58
7.5
M2_59
7.2
M2_60
7.2
M2_61
7.1
M2_62
7.1
M2_63
7.1
M2_64
7.0
M2_65
7.0
M2_66
6.9
M2_67
6.9
M2_68
6.9
M2_69
6.9
M2_70
6.9
M2_71
6.8
M2_72
6.7
M2_73
6.7
M2_74
6.5
M2_75
6.4
M2_76
6.4
M2_77
6.4
M2_78
6.3
M2_79
6.3
M2_80
6.0
M2_81
5.9
M2_82
5.8
M2_83
5.8
M2_84
5.8
M2_85
5.7
M2_86
5.6
M2_87
5.5
M2_88
5.5
M2_89
5.5
M2_90
4.9
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