A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.3
nTPM
Monaco:
81.2
nTPM
Schmiedel:
32.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.3
HPA sample
nTPM
Memory B-cell nTPM: 7.6
Samples: 6
Max nTPM: 12.2
Min nTPM: 4.1
P10809_1017
4.6
P10809_1025
7.4
P10809_1044
12.2
P10809_1063
4.1
P10809_1092
10.9
P10809_1105
6.4
Naive B-cell nTPM: 10.3
Samples: 6
Max nTPM: 40.7
Min nTPM: 3.5
P10809_1011
3.5
P10809_1029
4.1
P10809_1048
40.7
P10809_1067
3.7
P10809_1091
4.7
P10809_1104
5.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
81.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 10.9
Samples: 4
Max nTPM: 16.0
Min nTPM: 6.3
RHH5310_R3677
10.9
RHH5218_R3590
10.5
RHH5247_R3619
6.3
RHH5276_R3648
16.0
Naive B-cell nTPM: 5.3
Samples: 4
Max nTPM: 7.2
Min nTPM: 3.5
RHH5308_R3675
4.8
RHH5216_R3588
7.2
RHH5245_R3617
3.5
RHH5274_R3646
5.7
Non-switched memory B-cell nTPM: 4.8
Samples: 4
Max nTPM: 7.2
Min nTPM: 2.9
RHH5309_R3676
3.5
RHH5217_R3589
7.2
RHH5246_R3618
5.7
RHH5275_R3647
2.9
Plasmablast nTPM: 81.2
Samples: 4
Max nTPM: 113.7
Min nTPM: 51.5
RHH5312_R3679
58.8
RHH5220_R3592
113.7
RHH5249_R3621
100.7
RHH5278_R3650
51.5
Switched memory B-cell nTPM: 8.6
Samples: 4
Max nTPM: 11.0
Min nTPM: 5.4
RHH5311_R3678
7.7
RHH5219_R3591
11.0
RHH5248_R3620
5.4
RHH5277_R3649
10.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.0
Schmiedel sample id
TPM
Naive B-cell TPM: 32.0
Samples: 91
Max TPM: 45.4
Min TPM: 17.7
B_CELL_NAIVE_1
45.4
B_CELL_NAIVE_2
43.9
B_CELL_NAIVE_3
43.1
B_CELL_NAIVE_4
42.1
B_CELL_NAIVE_5
41.6
B_CELL_NAIVE_6
41.6
B_CELL_NAIVE_7
40.7
B_CELL_NAIVE_8
40.6
B_CELL_NAIVE_9
40.0
B_CELL_NAIVE_10
39.9
B_CELL_NAIVE_11
39.8
B_CELL_NAIVE_12
39.7
B_CELL_NAIVE_13
39.6
B_CELL_NAIVE_14
39.1
B_CELL_NAIVE_15
38.9
B_CELL_NAIVE_16
38.9
B_CELL_NAIVE_17
38.8
B_CELL_NAIVE_18
38.3
B_CELL_NAIVE_19
38.2
B_CELL_NAIVE_20
38.2
B_CELL_NAIVE_21
38.2
B_CELL_NAIVE_22
37.4
B_CELL_NAIVE_23
37.3
B_CELL_NAIVE_24
37.2
B_CELL_NAIVE_25
37.1
B_CELL_NAIVE_26
37.0
B_CELL_NAIVE_27
36.9
B_CELL_NAIVE_28
36.9
B_CELL_NAIVE_29
36.6
B_CELL_NAIVE_30
36.6
B_CELL_NAIVE_31
36.2
B_CELL_NAIVE_32
36.1
B_CELL_NAIVE_33
35.4
B_CELL_NAIVE_34
34.5
B_CELL_NAIVE_35
34.1
B_CELL_NAIVE_36
34.1
B_CELL_NAIVE_37
33.9
B_CELL_NAIVE_38
33.6
B_CELL_NAIVE_39
33.6
B_CELL_NAIVE_40
33.6
B_CELL_NAIVE_41
33.6
B_CELL_NAIVE_42
33.4
B_CELL_NAIVE_43
33.0
B_CELL_NAIVE_44
32.7
B_CELL_NAIVE_45
32.5
B_CELL_NAIVE_46
32.4
B_CELL_NAIVE_47
32.1
B_CELL_NAIVE_48
31.7
B_CELL_NAIVE_49
31.6
B_CELL_NAIVE_50
31.0
B_CELL_NAIVE_51
30.8
B_CELL_NAIVE_52
30.7
B_CELL_NAIVE_53
30.6
B_CELL_NAIVE_54
30.5
B_CELL_NAIVE_55
30.4
B_CELL_NAIVE_56
30.2
B_CELL_NAIVE_57
29.8
B_CELL_NAIVE_58
29.4
B_CELL_NAIVE_59
29.2
B_CELL_NAIVE_60
29.2
B_CELL_NAIVE_61
28.9
B_CELL_NAIVE_62
28.8
B_CELL_NAIVE_63
28.3
B_CELL_NAIVE_64
28.0
B_CELL_NAIVE_65
27.9
B_CELL_NAIVE_66
27.3
B_CELL_NAIVE_67
27.2
B_CELL_NAIVE_68
26.9
B_CELL_NAIVE_69
26.7
B_CELL_NAIVE_70
26.6
B_CELL_NAIVE_71
26.6
B_CELL_NAIVE_72
26.3
B_CELL_NAIVE_73
26.2
B_CELL_NAIVE_74
26.2
B_CELL_NAIVE_75
26.1
B_CELL_NAIVE_76
25.8
B_CELL_NAIVE_77
25.2
B_CELL_NAIVE_78
25.0
B_CELL_NAIVE_79
23.6
B_CELL_NAIVE_80
23.5
B_CELL_NAIVE_81
23.3
B_CELL_NAIVE_82
23.3
B_CELL_NAIVE_83
23.3
B_CELL_NAIVE_84
23.0
B_CELL_NAIVE_85
22.3
B_CELL_NAIVE_86
20.2
B_CELL_NAIVE_87
19.8
B_CELL_NAIVE_88
19.6
B_CELL_NAIVE_89
19.0
B_CELL_NAIVE_90
18.9
B_CELL_NAIVE_91
17.7
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The Human Protein Atlas project is funded
