A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.2
nTPM
Monaco:
7.0
nTPM
Schmiedel:
17.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.2
HPA sample
nTPM
Classical monocyte nTPM: 0.2
Samples: 6
Max nTPM: 0.4
Min nTPM: 0.0
P10809_1003
0.0
P10809_1020
0.2
P10809_1039
0.4
P10809_1058
0.3
P10809_1080
0.1
P10809_1107
0.2
Intermediate monocyte nTPM: 0.2
Samples: 6
Max nTPM: 0.5
Min nTPM: 0.0
P10809_1004
0.1
P10809_1023
0.3
P10809_1042
0.5
P10809_1061
0.0
P10809_1081
0.5
P10809_1108
0.0
Non-classical monocyte nTPM: 0.1
Samples: 5
Max nTPM: 0.3
Min nTPM: 0.0
P10809_1005
0.3
P10809_1053
0.0
P10809_1072
0.0
P10809_1082
0.0
P10809_1109
0.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.0
Monaco sample
nTPM
Classical monocyte nTPM: 7.0
Samples: 4
Max nTPM: 13.0
Min nTPM: 2.0
RHH5313_R3680
10.7
RHH5221_R3593
2.2
RHH5250_R3622
2.0
RHH5279_R3651
13.0
Intermediate monocyte nTPM: 3.2
Samples: 4
Max nTPM: 5.3
Min nTPM: 1.2
RHH5314_R3681
5.3
RHH5222_R3594
1.2
RHH5251_R3623
3.5
RHH5280_R3652
2.7
Non-classical monocyte nTPM: 3.5
Samples: 4
Max nTPM: 6.2
Min nTPM: 1.9
RHH5315_R3682
1.9
RHH5223_R3595
3.4
RHH5252_R3624
6.2
RHH5281_R3653
2.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.0
Schmiedel sample id
TPM
Classical monocyte TPM: 17.0
Samples: 91
Max TPM: 33.3
Min TPM: 5.0
MONOCYTES_1
33.3
MONOCYTES_2
30.5
MONOCYTES_3
30.5
MONOCYTES_4
29.9
MONOCYTES_5
28.7
MONOCYTES_6
25.7
MONOCYTES_7
25.4
MONOCYTES_8
25.1
MONOCYTES_9
24.2
MONOCYTES_10
23.6
MONOCYTES_11
23.5
MONOCYTES_12
23.0
MONOCYTES_13
22.9
MONOCYTES_14
22.2
MONOCYTES_15
22.2
MONOCYTES_16
21.5
MONOCYTES_17
21.2
MONOCYTES_18
21.1
MONOCYTES_19
20.8
MONOCYTES_20
20.8
MONOCYTES_21
20.8
MONOCYTES_22
20.2
MONOCYTES_23
20.2
MONOCYTES_24
19.7
MONOCYTES_25
19.6
MONOCYTES_26
19.6
MONOCYTES_27
19.5
MONOCYTES_28
19.4
MONOCYTES_29
19.3
MONOCYTES_30
19.3
MONOCYTES_31
19.2
MONOCYTES_32
19.1
MONOCYTES_33
19.1
MONOCYTES_34
19.1
MONOCYTES_35
18.7
MONOCYTES_36
18.7
MONOCYTES_37
18.7
MONOCYTES_38
18.5
MONOCYTES_39
18.3
MONOCYTES_40
18.1
MONOCYTES_41
18.1
MONOCYTES_42
18.1
MONOCYTES_43
17.5
MONOCYTES_44
17.4
MONOCYTES_45
17.2
MONOCYTES_46
17.2
MONOCYTES_47
17.0
MONOCYTES_48
16.3
MONOCYTES_49
16.1
MONOCYTES_50
16.0
MONOCYTES_51
15.5
MONOCYTES_52
15.4
MONOCYTES_53
15.3
MONOCYTES_54
15.3
MONOCYTES_55
15.1
MONOCYTES_56
15.0
MONOCYTES_57
14.8
MONOCYTES_58
14.6
MONOCYTES_59
14.5
MONOCYTES_60
14.4
MONOCYTES_61
14.2
MONOCYTES_62
14.2
MONOCYTES_63
14.2
MONOCYTES_64
14.1
MONOCYTES_65
13.8
MONOCYTES_66
13.8
MONOCYTES_67
13.6
MONOCYTES_68
13.4
MONOCYTES_69
13.0
MONOCYTES_70
13.0
MONOCYTES_71
12.8
MONOCYTES_72
12.8
MONOCYTES_73
12.7
MONOCYTES_74
12.7
MONOCYTES_75
12.2
MONOCYTES_76
12.0
MONOCYTES_77
12.0
MONOCYTES_78
11.3
MONOCYTES_79
10.4
MONOCYTES_80
10.2
MONOCYTES_81
10.1
MONOCYTES_82
9.6
MONOCYTES_83
9.0
MONOCYTES_84
8.7
MONOCYTES_85
8.7
MONOCYTES_86
8.3
MONOCYTES_87
7.9
MONOCYTES_88
6.3
MONOCYTES_89
6.1
MONOCYTES_90
5.5
MONOCYTES_91
5.0
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Non-classical monocyte TPM: 6.8
Samples: 90
Max TPM: 17.2
Min TPM: 2.3
M2_1
17.2
M2_2
16.3
M2_3
14.1
M2_4
12.1
M2_5
11.5
M2_6
10.9
M2_7
10.9
M2_8
10.7
M2_9
10.7
M2_10
10.5
M2_11
9.8
M2_12
9.6
M2_13
9.6
M2_14
9.5
M2_15
9.4
M2_16
9.4
M2_17
9.3
M2_18
9.0
M2_19
9.0
M2_20
8.8
M2_21
8.4
M2_22
8.3
M2_23
8.3
M2_24
8.3
M2_25
8.3
M2_26
8.0
M2_27
7.8
M2_28
7.7
M2_29
7.7
M2_30
7.7
M2_31
7.6
M2_32
7.6
M2_33
7.5
M2_34
7.2
M2_35
7.2
M2_36
7.1
M2_37
7.0
M2_38
7.0
M2_39
7.0
M2_40
6.8
M2_41
6.7
M2_42
6.7
M2_43
6.6
M2_44
6.5
M2_45
6.5
M2_46
6.4
M2_47
6.3
M2_48
6.2
M2_49
6.2
M2_50
6.2
M2_51
6.1
M2_52
6.1
M2_53
6.1
M2_54
6.0
M2_55
5.8
M2_56
5.8
M2_57
5.8
M2_58
5.7
M2_59
5.7
M2_60
5.3
M2_61
5.3
M2_62
5.2
M2_63
5.1
M2_64
5.1
M2_65
5.1
M2_66
5.1
M2_67
4.8
M2_68
4.7
M2_69
4.6
M2_70
4.6
M2_71
4.5
M2_72
4.4
M2_73
4.1
M2_74
4.1
M2_75
4.0
M2_76
3.9
M2_77
3.8
M2_78
3.7
M2_79
3.7
M2_80
3.6
M2_81
3.5
M2_82
3.5
M2_83
3.4
M2_84
3.0
M2_85
2.9
M2_86
2.8
M2_87
2.7
M2_88
2.4
M2_89
2.4
M2_90
2.3
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