A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.4
nTPM
Monaco:
40.1
nTPM
Schmiedel:
52.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.4
HPA sample
nTPM
Classical monocyte nTPM: 9.7
Samples: 6
Max nTPM: 12.9
Min nTPM: 6.3
P10809_1003
10.9
P10809_1020
9.6
P10809_1039
12.9
P10809_1058
10.8
P10809_1080
6.3
P10809_1107
7.4
Intermediate monocyte nTPM: 10.8
Samples: 6
Max nTPM: 23.6
Min nTPM: 1.5
P10809_1004
9.7
P10809_1023
23.6
P10809_1042
13.4
P10809_1061
1.5
P10809_1081
8.3
P10809_1108
8.1
Non-classical monocyte nTPM: 16.4
Samples: 5
Max nTPM: 26.2
Min nTPM: 9.2
P10809_1005
12.7
P10809_1053
16.2
P10809_1072
26.2
P10809_1082
9.2
P10809_1109
17.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.1
Monaco sample
nTPM
Classical monocyte nTPM: 30.1
Samples: 4
Max nTPM: 48.4
Min nTPM: 22.2
RHH5313_R3680
22.2
RHH5221_R3593
23.3
RHH5250_R3622
26.4
RHH5279_R3651
48.4
Intermediate monocyte nTPM: 40.1
Samples: 4
Max nTPM: 47.5
Min nTPM: 25.7
RHH5314_R3681
45.6
RHH5222_R3594
25.7
RHH5251_R3623
41.6
RHH5280_R3652
47.5
Non-classical monocyte nTPM: 27.9
Samples: 4
Max nTPM: 31.4
Min nTPM: 25.8
RHH5315_R3682
28.4
RHH5223_R3595
31.4
RHH5252_R3624
26.1
RHH5281_R3653
25.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.4
Schmiedel sample id
TPM
Classical monocyte TPM: 35.6
Samples: 91
Max TPM: 45.0
Min TPM: 28.2
MONOCYTES_1
45.0
MONOCYTES_2
42.0
MONOCYTES_3
41.8
MONOCYTES_4
41.5
MONOCYTES_5
41.4
MONOCYTES_6
41.3
MONOCYTES_7
40.9
MONOCYTES_8
40.8
MONOCYTES_9
40.7
MONOCYTES_10
40.6
MONOCYTES_11
40.5
MONOCYTES_12
40.1
MONOCYTES_13
40.1
MONOCYTES_14
40.1
MONOCYTES_15
39.2
MONOCYTES_16
39.2
MONOCYTES_17
39.2
MONOCYTES_18
39.0
MONOCYTES_19
38.9
MONOCYTES_20
38.7
MONOCYTES_21
38.6
MONOCYTES_22
38.5
MONOCYTES_23
38.4
MONOCYTES_24
38.3
MONOCYTES_25
38.3
MONOCYTES_26
38.0
MONOCYTES_27
37.8
MONOCYTES_28
37.6
MONOCYTES_29
37.6
MONOCYTES_30
37.2
MONOCYTES_31
37.2
MONOCYTES_32
37.1
MONOCYTES_33
37.1
MONOCYTES_34
37.0
MONOCYTES_35
37.0
MONOCYTES_36
36.8
MONOCYTES_37
36.7
MONOCYTES_38
36.6
MONOCYTES_39
36.5
MONOCYTES_40
36.4
MONOCYTES_41
36.4
MONOCYTES_42
36.1
MONOCYTES_43
35.7
MONOCYTES_44
35.7
MONOCYTES_45
35.6
MONOCYTES_46
35.6
MONOCYTES_47
35.5
MONOCYTES_48
35.4
MONOCYTES_49
35.3
MONOCYTES_50
35.3
MONOCYTES_51
34.9
MONOCYTES_52
34.9
MONOCYTES_53
34.8
MONOCYTES_54
34.8
MONOCYTES_55
34.5
MONOCYTES_56
34.5
MONOCYTES_57
34.4
MONOCYTES_58
34.4
MONOCYTES_59
34.4
MONOCYTES_60
34.3
MONOCYTES_61
34.2
MONOCYTES_62
34.0
MONOCYTES_63
33.9
MONOCYTES_64
33.6
MONOCYTES_65
33.5
MONOCYTES_66
33.3
MONOCYTES_67
33.1
MONOCYTES_68
32.8
MONOCYTES_69
32.7
MONOCYTES_70
32.7
MONOCYTES_71
32.6
MONOCYTES_72
32.2
MONOCYTES_73
32.2
MONOCYTES_74
32.1
MONOCYTES_75
32.0
MONOCYTES_76
31.8
MONOCYTES_77
31.7
MONOCYTES_78
31.7
MONOCYTES_79
31.6
MONOCYTES_80
31.6
MONOCYTES_81
31.5
MONOCYTES_82
30.9
MONOCYTES_83
30.7
MONOCYTES_84
30.3
MONOCYTES_85
30.0
MONOCYTES_86
29.8
MONOCYTES_87
29.8
MONOCYTES_88
29.6
MONOCYTES_89
29.4
MONOCYTES_90
28.4
MONOCYTES_91
28.2
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Non-classical monocyte TPM: 52.4
Samples: 90
Max TPM: 62.2
Min TPM: 41.8
M2_1
62.2
M2_2
62.1
M2_3
61.9
M2_4
61.8
M2_5
61.4
M2_6
61.1
M2_7
61.0
M2_8
60.8
M2_9
60.5
M2_10
60.4
M2_11
59.4
M2_12
59.1
M2_13
58.6
M2_14
57.4
M2_15
57.3
M2_16
57.1
M2_17
57.1
M2_18
56.9
M2_19
56.5
M2_20
56.3
M2_21
56.2
M2_22
56.0
M2_23
55.9
M2_24
55.8
M2_25
55.6
M2_26
55.4
M2_27
55.2
M2_28
55.1
M2_29
55.1
M2_30
55.0
M2_31
54.2
M2_32
54.0
M2_33
54.0
M2_34
53.9
M2_35
53.5
M2_36
53.5
M2_37
53.4
M2_38
53.0
M2_39
53.0
M2_40
52.8
M2_41
52.7
M2_42
52.7
M2_43
52.4
M2_44
52.3
M2_45
52.3
M2_46
52.2
M2_47
52.2
M2_48
51.9
M2_49
51.8
M2_50
51.3
M2_51
51.0
M2_52
51.0
M2_53
50.5
M2_54
50.4
M2_55
50.2
M2_56
50.2
M2_57
50.2
M2_58
50.1
M2_59
50.1
M2_60
49.9
M2_61
49.9
M2_62
49.9
M2_63
49.7
M2_64
49.4
M2_65
49.1
M2_66
49.1
M2_67
49.1
M2_68
49.0
M2_69
48.9
M2_70
48.5
M2_71
48.4
M2_72
48.3
M2_73
48.0
M2_74
47.8
M2_75
47.6
M2_76
47.4
M2_77
47.3
M2_78
46.5
M2_79
46.3
M2_80
46.2
M2_81
45.7
M2_82
45.5
M2_83
45.2
M2_84
45.2
M2_85
45.0
M2_86
44.4
M2_87
43.9
M2_88
43.6
M2_89
42.7
M2_90
41.8
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