A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.1
nTPM
Monaco:
42.8
nTPM
Schmiedel:
32.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.1
HPA sample
nTPM
Classical monocyte nTPM: 5.1
Samples: 6
Max nTPM: 6.7
Min nTPM: 3.1
P10809_1003
6.7
P10809_1020
4.4
P10809_1039
5.8
P10809_1058
5.5
P10809_1080
3.1
P10809_1107
5.2
Intermediate monocyte nTPM: 2.8
Samples: 6
Max nTPM: 5.0
Min nTPM: 1.4
P10809_1004
5.0
P10809_1023
1.4
P10809_1042
1.5
P10809_1061
3.6
P10809_1081
2.2
P10809_1108
3.3
Non-classical monocyte nTPM: 2.8
Samples: 5
Max nTPM: 4.7
Min nTPM: 0.5
P10809_1005
4.7
P10809_1053
2.4
P10809_1072
0.5
P10809_1082
3.2
P10809_1109
3.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.8
Monaco sample
nTPM
Classical monocyte nTPM: 40.8
Samples: 4
Max nTPM: 47.0
Min nTPM: 36.7
RHH5313_R3680
42.1
RHH5221_R3593
36.7
RHH5250_R3622
47.0
RHH5279_R3651
37.5
Intermediate monocyte nTPM: 38.1
Samples: 4
Max nTPM: 45.6
Min nTPM: 26.8
RHH5314_R3681
45.6
RHH5222_R3594
39.6
RHH5251_R3623
40.2
RHH5280_R3652
26.8
Non-classical monocyte nTPM: 42.9
Samples: 4
Max nTPM: 58.1
Min nTPM: 30.3
RHH5315_R3682
41.7
RHH5223_R3595
58.1
RHH5252_R3624
41.3
RHH5281_R3653
30.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.4
Schmiedel sample id
TPM
Classical monocyte TPM: 25.9
Samples: 91
Max TPM: 39.2
Min TPM: 18.5
MONOCYTES_1
39.2
MONOCYTES_2
36.1
MONOCYTES_3
35.5
MONOCYTES_4
34.4
MONOCYTES_5
33.8
MONOCYTES_6
33.0
MONOCYTES_7
32.6
MONOCYTES_8
32.4
MONOCYTES_9
32.1
MONOCYTES_10
31.8
MONOCYTES_11
31.8
MONOCYTES_12
31.5
MONOCYTES_13
31.2
MONOCYTES_14
31.0
MONOCYTES_15
30.7
MONOCYTES_16
30.5
MONOCYTES_17
30.4
MONOCYTES_18
30.3
MONOCYTES_19
30.2
MONOCYTES_20
30.2
MONOCYTES_21
29.8
MONOCYTES_22
29.6
MONOCYTES_23
29.4
MONOCYTES_24
29.2
MONOCYTES_25
29.0
MONOCYTES_26
28.9
MONOCYTES_27
28.8
MONOCYTES_28
28.6
MONOCYTES_29
27.9
MONOCYTES_30
27.9
MONOCYTES_31
27.7
MONOCYTES_32
27.5
MONOCYTES_33
27.5
MONOCYTES_34
27.4
MONOCYTES_35
27.2
MONOCYTES_36
26.9
MONOCYTES_37
26.8
MONOCYTES_38
26.4
MONOCYTES_39
26.0
MONOCYTES_40
25.8
MONOCYTES_41
25.7
MONOCYTES_42
25.7
MONOCYTES_43
25.3
MONOCYTES_44
25.2
MONOCYTES_45
25.2
MONOCYTES_46
25.1
MONOCYTES_47
24.9
MONOCYTES_48
24.9
MONOCYTES_49
24.7
MONOCYTES_50
24.6
MONOCYTES_51
24.6
MONOCYTES_52
24.5
MONOCYTES_53
24.3
MONOCYTES_54
24.3
MONOCYTES_55
24.2
MONOCYTES_56
24.2
MONOCYTES_57
24.1
MONOCYTES_58
24.0
MONOCYTES_59
23.8
MONOCYTES_60
23.8
MONOCYTES_61
23.2
MONOCYTES_62
23.1
MONOCYTES_63
22.8
MONOCYTES_64
22.8
MONOCYTES_65
22.7
MONOCYTES_66
22.6
MONOCYTES_67
22.3
MONOCYTES_68
22.2
MONOCYTES_69
22.0
MONOCYTES_70
22.0
MONOCYTES_71
21.9
MONOCYTES_72
21.8
MONOCYTES_73
21.4
MONOCYTES_74
21.3
MONOCYTES_75
21.2
MONOCYTES_76
21.1
MONOCYTES_77
21.0
MONOCYTES_78
20.9
MONOCYTES_79
20.7
MONOCYTES_80
20.6
MONOCYTES_81
20.5
MONOCYTES_82
20.4
MONOCYTES_83
20.4
MONOCYTES_84
20.4
MONOCYTES_85
19.9
MONOCYTES_86
19.8
MONOCYTES_87
19.7
MONOCYTES_88
19.4
MONOCYTES_89
19.4
MONOCYTES_90
18.8
MONOCYTES_91
18.5
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Non-classical monocyte TPM: 32.4
Samples: 90
Max TPM: 54.5
Min TPM: 19.7
M2_1
54.5
M2_2
45.4
M2_3
45.3
M2_4
44.5
M2_5
41.5
M2_6
40.9
M2_7
40.4
M2_8
40.3
M2_9
40.2
M2_10
40.0
M2_11
39.7
M2_12
39.6
M2_13
39.2
M2_14
39.1
M2_15
38.9
M2_16
38.8
M2_17
38.8
M2_18
38.7
M2_19
38.6
M2_20
38.0
M2_21
37.3
M2_22
37.1
M2_23
36.7
M2_24
36.3
M2_25
36.0
M2_26
35.7
M2_27
35.1
M2_28
35.1
M2_29
35.0
M2_30
35.0
M2_31
34.6
M2_32
34.6
M2_33
34.0
M2_34
33.3
M2_35
33.3
M2_36
33.2
M2_37
32.9
M2_38
32.5
M2_39
32.3
M2_40
31.9
M2_41
31.9
M2_42
31.8
M2_43
31.8
M2_44
31.6
M2_45
31.4
M2_46
31.4
M2_47
31.4
M2_48
30.9
M2_49
30.6
M2_50
30.5
M2_51
30.5
M2_52
30.5
M2_53
30.4
M2_54
30.3
M2_55
29.9
M2_56
29.9
M2_57
29.7
M2_58
29.5
M2_59
29.5
M2_60
29.4
M2_61
29.3
M2_62
29.0
M2_63
29.0
M2_64
28.9
M2_65
28.9
M2_66
28.7
M2_67
28.5
M2_68
28.0
M2_69
27.9
M2_70
27.5
M2_71
27.4
M2_72
27.2
M2_73
27.1
M2_74
27.0
M2_75
26.7
M2_76
26.7
M2_77
26.6
M2_78
26.3
M2_79
26.2
M2_80
26.2
M2_81
26.0
M2_82
25.9
M2_83
25.4
M2_84
25.4
M2_85
25.4
M2_86
24.3
M2_87
23.0
M2_88
22.7
M2_89
20.1
M2_90
19.7
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