A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.2
nTPM
Monaco:
48.2
nTPM
Schmiedel:
49.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.2
HPA sample
nTPM
NK-cell nTPM: 10.2
Samples: 6
Max nTPM: 18.7
Min nTPM: 0.6
P10809_1013
5.7
P10809_1033
9.4
P10809_1052
9.4
P10809_1071
17.2
P10809_1093
0.6
P10809_1103
18.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.2
Monaco sample
nTPM
NK-cell nTPM: 48.1
Samples: 4
Max nTPM: 56.3
Min nTPM: 42.5
RHH5316_R3683
45.0
RHH5224_R3596
48.7
RHH5253_R3625
56.3
RHH5282_R3654
42.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.0
Schmiedel sample id
TPM
NK-cell TPM: 49.0
Samples: 90
Max TPM: 75.6
Min TPM: 22.3
NK_1
75.6
NK_2
73.1
NK_3
69.2
NK_4
67.9
NK_5
66.7
NK_6
65.2
NK_7
64.0
NK_8
60.9
NK_9
59.5
NK_10
58.9
NK_11
58.1
NK_12
57.7
NK_13
57.7
NK_14
57.3
NK_15
56.9
NK_16
55.9
NK_17
55.5
NK_18
55.1
NK_19
54.9
NK_20
54.6
NK_21
54.1
NK_22
53.7
NK_23
52.8
NK_24
52.1
NK_25
52.0
NK_26
51.9
NK_27
51.8
NK_28
51.6
NK_29
51.4
NK_30
51.3
NK_31
51.0
NK_32
50.4
NK_33
49.9
NK_34
49.8
NK_35
49.6
NK_36
49.4
NK_37
49.4
NK_38
49.3
NK_39
49.2
NK_40
49.0
NK_41
48.9
NK_42
48.9
NK_43
48.6
NK_44
48.4
NK_45
47.9
NK_46
47.7
NK_47
47.6
NK_48
47.6
NK_49
47.5
NK_50
47.4
NK_51
47.3
NK_52
47.0
NK_53
47.0
NK_54
46.8
NK_55
46.8
NK_56
46.5
NK_57
46.2
NK_58
45.8
NK_59
45.5
NK_60
44.8
NK_61
44.5
NK_62
44.3
NK_63
44.1
NK_64
44.0
NK_65
43.7
NK_66
43.7
NK_67
43.5
NK_68
43.0
NK_69
42.8
NK_70
42.6
NK_71
42.5
NK_72
42.1
NK_73
42.1
NK_74
42.1
NK_75
42.0
NK_76
41.8
NK_77
41.7
NK_78
41.5
NK_79
41.2
NK_80
41.1
NK_81
40.7
NK_82
39.4
NK_83
39.3
NK_84
39.0
NK_85
38.0
NK_86
37.6
NK_87
37.3
NK_88
36.8
NK_89
35.0
NK_90
22.3
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