A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.0
nTPM
Monaco:
66.4
nTPM
Schmiedel:
99.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.0
HPA sample
nTPM
Classical monocyte nTPM: 11.2
Samples: 6
Max nTPM: 23.9
Min nTPM: 5.6
P10809_1003
23.9
P10809_1020
9.3
P10809_1039
5.6
P10809_1058
7.6
P10809_1080
10.2
P10809_1107
10.7
Intermediate monocyte nTPM: 13.6
Samples: 6
Max nTPM: 18.4
Min nTPM: 7.4
P10809_1004
18.4
P10809_1023
13.6
P10809_1042
16.4
P10809_1061
7.4
P10809_1081
12.2
P10809_1108
13.6
Non-classical monocyte nTPM: 17.0
Samples: 5
Max nTPM: 23.5
Min nTPM: 11.9
P10809_1005
23.5
P10809_1053
13.3
P10809_1072
19.9
P10809_1082
11.9
P10809_1109
16.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.4
Monaco sample
nTPM
Classical monocyte nTPM: 59.5
Samples: 4
Max nTPM: 81.1
Min nTPM: 41.3
RHH5313_R3680
54.8
RHH5221_R3593
60.6
RHH5250_R3622
81.1
RHH5279_R3651
41.3
Intermediate monocyte nTPM: 62.5
Samples: 4
Max nTPM: 77.1
Min nTPM: 49.7
RHH5314_R3681
53.7
RHH5222_R3594
77.1
RHH5251_R3623
69.3
RHH5280_R3652
49.7
Non-classical monocyte nTPM: 66.4
Samples: 4
Max nTPM: 76.2
Min nTPM: 59.0
RHH5315_R3682
60.7
RHH5223_R3595
69.7
RHH5252_R3624
76.2
RHH5281_R3653
59.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
99.4
Schmiedel sample id
TPM
Classical monocyte TPM: 99.5
Samples: 91
Max TPM: 170.4
Min TPM: 41.1
MONOCYTES_1
170.4
MONOCYTES_2
169.9
MONOCYTES_3
154.9
MONOCYTES_4
153.0
MONOCYTES_5
147.6
MONOCYTES_6
144.9
MONOCYTES_7
141.6
MONOCYTES_8
139.8
MONOCYTES_9
135.4
MONOCYTES_10
134.0
MONOCYTES_11
131.7
MONOCYTES_12
130.9
MONOCYTES_13
126.3
MONOCYTES_14
126.1
MONOCYTES_15
124.4
MONOCYTES_16
123.3
MONOCYTES_17
123.1
MONOCYTES_18
121.7
MONOCYTES_19
120.3
MONOCYTES_20
119.3
MONOCYTES_21
118.5
MONOCYTES_22
116.5
MONOCYTES_23
115.6
MONOCYTES_24
113.0
MONOCYTES_25
112.2
MONOCYTES_26
112.2
MONOCYTES_27
110.9
MONOCYTES_28
110.7
MONOCYTES_29
109.3
MONOCYTES_30
109.2
MONOCYTES_31
109.0
MONOCYTES_32
108.8
MONOCYTES_33
108.6
MONOCYTES_34
107.5
MONOCYTES_35
107.1
MONOCYTES_36
106.4
MONOCYTES_37
105.6
MONOCYTES_38
105.1
MONOCYTES_39
104.8
MONOCYTES_40
104.7
MONOCYTES_41
104.1
MONOCYTES_42
101.0
MONOCYTES_43
100.6
MONOCYTES_44
98.6
MONOCYTES_45
97.9
MONOCYTES_46
97.6
MONOCYTES_47
97.4
MONOCYTES_48
96.4
MONOCYTES_49
95.8
MONOCYTES_50
94.8
MONOCYTES_51
94.5
MONOCYTES_52
94.3
MONOCYTES_53
92.7
MONOCYTES_54
91.6
MONOCYTES_55
90.6
MONOCYTES_56
89.4
MONOCYTES_57
89.3
MONOCYTES_58
88.7
MONOCYTES_59
88.6
MONOCYTES_60
86.6
MONOCYTES_61
86.3
MONOCYTES_62
85.4
MONOCYTES_63
85.0
MONOCYTES_64
84.2
MONOCYTES_65
82.3
MONOCYTES_66
82.1
MONOCYTES_67
81.8
MONOCYTES_68
81.4
MONOCYTES_69
81.3
MONOCYTES_70
80.4
MONOCYTES_71
78.9
MONOCYTES_72
78.9
MONOCYTES_73
77.5
MONOCYTES_74
75.8
MONOCYTES_75
75.6
MONOCYTES_76
75.4
MONOCYTES_77
73.2
MONOCYTES_78
72.3
MONOCYTES_79
71.9
MONOCYTES_80
70.5
MONOCYTES_81
70.1
MONOCYTES_82
66.5
MONOCYTES_83
66.0
MONOCYTES_84
66.0
MONOCYTES_85
65.4
MONOCYTES_86
64.6
MONOCYTES_87
58.3
MONOCYTES_88
56.6
MONOCYTES_89
48.0
MONOCYTES_90
42.6
MONOCYTES_91
41.1
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Non-classical monocyte TPM: 51.4
Samples: 90
Max TPM: 88.6
Min TPM: 22.3
M2_1
88.6
M2_2
84.1
M2_3
80.9
M2_4
79.4
M2_5
79.3
M2_6
77.8
M2_7
77.7
M2_8
77.3
M2_9
76.7
M2_10
73.2
M2_11
70.6
M2_12
70.2
M2_13
69.7
M2_14
67.3
M2_15
67.1
M2_16
66.6
M2_17
64.6
M2_18
63.3
M2_19
63.2
M2_20
62.6
M2_21
62.4
M2_22
62.3
M2_23
62.1
M2_24
61.7
M2_25
60.6
M2_26
60.1
M2_27
59.7
M2_28
59.7
M2_29
59.3
M2_30
58.6
M2_31
58.5
M2_32
57.9
M2_33
56.9
M2_34
56.4
M2_35
56.3
M2_36
56.0
M2_37
55.8
M2_38
55.6
M2_39
52.9
M2_40
52.3
M2_41
52.3
M2_42
52.0
M2_43
51.2
M2_44
51.0
M2_45
50.5
M2_46
50.2
M2_47
48.9
M2_48
48.5
M2_49
48.3
M2_50
47.8
M2_51
47.3
M2_52
47.3
M2_53
47.3
M2_54
47.1
M2_55
46.7
M2_56
45.9
M2_57
44.8
M2_58
43.9
M2_59
43.1
M2_60
42.4
M2_61
42.2
M2_62
42.0
M2_63
41.2
M2_64
40.5
M2_65
40.1
M2_66
39.8
M2_67
39.2
M2_68
38.9
M2_69
38.8
M2_70
38.7
M2_71
38.7
M2_72
38.5
M2_73
37.0
M2_74
36.8
M2_75
36.3
M2_76
36.1
M2_77
35.6
M2_78
34.7
M2_79
34.6
M2_80
34.6
M2_81
33.8
M2_82
33.6
M2_83
30.9
M2_84
29.6
M2_85
29.1
M2_86
28.6
M2_87
28.3
M2_88
23.4
M2_89
22.9
M2_90
22.3
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