A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.2
nTPM
Monaco:
49.6
nTPM
Schmiedel:
53.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.2
HPA sample
nTPM
Classical monocyte nTPM: 0.7
Samples: 6
Max nTPM: 0.9
Min nTPM: 0.5
P10809_1003
0.6
P10809_1020
0.7
P10809_1039
0.7
P10809_1058
0.5
P10809_1080
0.8
P10809_1107
0.9
Intermediate monocyte nTPM: 3.3
Samples: 6
Max nTPM: 5.3
Min nTPM: 1.9
P10809_1004
5.3
P10809_1023
1.9
P10809_1042
4.9
P10809_1061
2.7
P10809_1081
2.4
P10809_1108
2.3
Non-classical monocyte nTPM: 7.3
Samples: 5
Max nTPM: 19.0
Min nTPM: 2.8
P10809_1005
6.3
P10809_1053
4.3
P10809_1072
19.0
P10809_1082
2.8
P10809_1109
3.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.6
Monaco sample
nTPM
Classical monocyte nTPM: 11.3
Samples: 4
Max nTPM: 12.0
Min nTPM: 10.2
RHH5313_R3680
12.0
RHH5221_R3593
10.2
RHH5250_R3622
11.6
RHH5279_R3651
11.5
Intermediate monocyte nTPM: 26.8
Samples: 4
Max nTPM: 38.3
Min nTPM: 20.7
RHH5314_R3681
20.7
RHH5222_R3594
25.5
RHH5251_R3623
38.3
RHH5280_R3652
22.5
Non-classical monocyte nTPM: 49.6
Samples: 4
Max nTPM: 56.9
Min nTPM: 41.0
RHH5315_R3682
48.9
RHH5223_R3595
56.9
RHH5252_R3624
51.6
RHH5281_R3653
41.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.2
Schmiedel sample id
TPM
Classical monocyte TPM: 14.8
Samples: 91
Max TPM: 21.8
Min TPM: 8.9
MONOCYTES_1
21.8
MONOCYTES_2
21.7
MONOCYTES_3
21.5
MONOCYTES_4
20.4
MONOCYTES_5
20.3
MONOCYTES_6
19.3
MONOCYTES_7
18.6
MONOCYTES_8
18.5
MONOCYTES_9
18.0
MONOCYTES_10
18.0
MONOCYTES_11
17.9
MONOCYTES_12
17.5
MONOCYTES_13
17.4
MONOCYTES_14
17.3
MONOCYTES_15
17.2
MONOCYTES_16
16.9
MONOCYTES_17
16.8
MONOCYTES_18
16.7
MONOCYTES_19
16.7
MONOCYTES_20
16.4
MONOCYTES_21
16.4
MONOCYTES_22
16.3
MONOCYTES_23
16.3
MONOCYTES_24
16.2
MONOCYTES_25
16.2
MONOCYTES_26
16.0
MONOCYTES_27
16.0
MONOCYTES_28
16.0
MONOCYTES_29
15.9
MONOCYTES_30
15.9
MONOCYTES_31
15.8
MONOCYTES_32
15.8
MONOCYTES_33
15.7
MONOCYTES_34
15.7
MONOCYTES_35
15.6
MONOCYTES_36
15.6
MONOCYTES_37
15.5
MONOCYTES_38
15.5
MONOCYTES_39
15.4
MONOCYTES_40
15.4
MONOCYTES_41
15.0
MONOCYTES_42
15.0
MONOCYTES_43
14.9
MONOCYTES_44
14.9
MONOCYTES_45
14.8
MONOCYTES_46
14.8
MONOCYTES_47
14.7
MONOCYTES_48
14.7
MONOCYTES_49
14.5
MONOCYTES_50
14.4
MONOCYTES_51
14.3
MONOCYTES_52
14.3
MONOCYTES_53
14.3
MONOCYTES_54
14.3
MONOCYTES_55
14.2
MONOCYTES_56
13.8
MONOCYTES_57
13.8
MONOCYTES_58
13.6
MONOCYTES_59
13.6
MONOCYTES_60
13.6
MONOCYTES_61
13.6
MONOCYTES_62
13.5
MONOCYTES_63
13.5
MONOCYTES_64
13.4
MONOCYTES_65
13.4
MONOCYTES_66
13.4
MONOCYTES_67
13.3
MONOCYTES_68
13.2
MONOCYTES_69
13.0
MONOCYTES_70
12.9
MONOCYTES_71
12.7
MONOCYTES_72
12.5
MONOCYTES_73
12.4
MONOCYTES_74
12.3
MONOCYTES_75
12.2
MONOCYTES_76
12.2
MONOCYTES_77
12.1
MONOCYTES_78
11.9
MONOCYTES_79
11.9
MONOCYTES_80
11.9
MONOCYTES_81
11.8
MONOCYTES_82
11.6
MONOCYTES_83
11.4
MONOCYTES_84
11.3
MONOCYTES_85
11.1
MONOCYTES_86
11.1
MONOCYTES_87
10.7
MONOCYTES_88
10.1
MONOCYTES_89
10.0
MONOCYTES_90
9.7
MONOCYTES_91
8.9
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Non-classical monocyte TPM: 53.2
Samples: 90
Max TPM: 99.0
Min TPM: 29.5
M2_1
99.0
M2_2
94.3
M2_3
80.7
M2_4
78.0
M2_5
76.2
M2_6
76.0
M2_7
72.6
M2_8
70.8
M2_9
70.5
M2_10
69.5
M2_11
68.8
M2_12
67.8
M2_13
67.3
M2_14
67.0
M2_15
66.8
M2_16
66.5
M2_17
63.1
M2_18
63.1
M2_19
62.4
M2_20
61.9
M2_21
60.5
M2_22
59.9
M2_23
59.3
M2_24
59.1
M2_25
58.5
M2_26
58.1
M2_27
57.8
M2_28
57.7
M2_29
57.2
M2_30
55.9
M2_31
55.8
M2_32
55.5
M2_33
55.4
M2_34
55.0
M2_35
54.3
M2_36
54.1
M2_37
53.8
M2_38
53.6
M2_39
53.1
M2_40
52.9
M2_41
52.9
M2_42
52.8
M2_43
52.8
M2_44
52.1
M2_45
51.1
M2_46
50.7
M2_47
50.7
M2_48
50.2
M2_49
49.8
M2_50
49.5
M2_51
49.5
M2_52
49.2
M2_53
48.8
M2_54
48.3
M2_55
48.1
M2_56
47.3
M2_57
47.3
M2_58
47.2
M2_59
47.1
M2_60
46.6
M2_61
46.6
M2_62
46.2
M2_63
46.2
M2_64
46.1
M2_65
45.3
M2_66
44.2
M2_67
44.2
M2_68
44.0
M2_69
43.7
M2_70
43.6
M2_71
43.2
M2_72
42.9
M2_73
42.9
M2_74
42.4
M2_75
42.4
M2_76
41.9
M2_77
41.8
M2_78
40.8
M2_79
39.2
M2_80
39.0
M2_81
38.1
M2_82
37.9
M2_83
37.7
M2_84
37.1
M2_85
36.8
M2_86
36.2
M2_87
36.1
M2_88
33.5
M2_89
33.1
M2_90
29.5
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