A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.6
nTPM
Monaco:
23.2
nTPM
Schmiedel:
12.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.6
HPA sample
nTPM
Classical monocyte nTPM: 8.5
Samples: 6
Max nTPM: 11.5
Min nTPM: 5.9
P10809_1003
7.9
P10809_1020
7.8
P10809_1039
11.5
P10809_1058
5.9
P10809_1080
11.1
P10809_1107
7.0
Intermediate monocyte nTPM: 11.5
Samples: 6
Max nTPM: 12.8
Min nTPM: 10.3
P10809_1004
10.8
P10809_1023
12.8
P10809_1042
10.6
P10809_1061
11.6
P10809_1081
10.3
P10809_1108
12.8
Non-classical monocyte nTPM: 20.6
Samples: 5
Max nTPM: 37.0
Min nTPM: 11.8
P10809_1005
11.8
P10809_1053
21.4
P10809_1072
37.0
P10809_1082
16.9
P10809_1109
15.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.2
Monaco sample
nTPM
Classical monocyte nTPM: 18.1
Samples: 4
Max nTPM: 24.7
Min nTPM: 12.5
RHH5313_R3680
20.6
RHH5221_R3593
14.4
RHH5250_R3622
24.7
RHH5279_R3651
12.5
Intermediate monocyte nTPM: 20.2
Samples: 4
Max nTPM: 26.7
Min nTPM: 14.0
RHH5314_R3681
26.7
RHH5222_R3594
22.0
RHH5251_R3623
18.1
RHH5280_R3652
14.0
Non-classical monocyte nTPM: 23.2
Samples: 4
Max nTPM: 29.7
Min nTPM: 18.4
RHH5315_R3682
25.3
RHH5223_R3595
19.2
RHH5252_R3624
18.4
RHH5281_R3653
29.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.7
Schmiedel sample id
TPM
Classical monocyte TPM: 5.9
Samples: 91
Max TPM: 10.1
Min TPM: 2.6
MONOCYTES_1
10.1
MONOCYTES_2
9.5
MONOCYTES_3
9.3
MONOCYTES_4
9.3
MONOCYTES_5
8.8
MONOCYTES_6
8.7
MONOCYTES_7
8.7
MONOCYTES_8
8.7
MONOCYTES_9
8.4
MONOCYTES_10
8.1
MONOCYTES_11
8.0
MONOCYTES_12
7.7
MONOCYTES_13
7.6
MONOCYTES_14
7.5
MONOCYTES_15
7.5
MONOCYTES_16
7.5
MONOCYTES_17
7.3
MONOCYTES_18
7.2
MONOCYTES_19
7.1
MONOCYTES_20
7.1
MONOCYTES_21
7.0
MONOCYTES_22
7.0
MONOCYTES_23
7.0
MONOCYTES_24
6.9
MONOCYTES_25
6.7
MONOCYTES_26
6.6
MONOCYTES_27
6.6
MONOCYTES_28
6.5
MONOCYTES_29
6.4
MONOCYTES_30
6.4
MONOCYTES_31
6.4
MONOCYTES_32
6.4
MONOCYTES_33
6.3
MONOCYTES_34
6.2
MONOCYTES_35
6.2
MONOCYTES_36
6.1
MONOCYTES_37
6.1
MONOCYTES_38
6.0
MONOCYTES_39
5.9
MONOCYTES_40
5.8
MONOCYTES_41
5.8
MONOCYTES_42
5.8
MONOCYTES_43
5.8
MONOCYTES_44
5.8
MONOCYTES_45
5.8
MONOCYTES_46
5.7
MONOCYTES_47
5.7
MONOCYTES_48
5.6
MONOCYTES_49
5.6
MONOCYTES_50
5.5
MONOCYTES_51
5.5
MONOCYTES_52
5.4
MONOCYTES_53
5.4
MONOCYTES_54
5.4
MONOCYTES_55
5.4
MONOCYTES_56
5.3
MONOCYTES_57
5.3
MONOCYTES_58
5.2
MONOCYTES_59
5.2
MONOCYTES_60
5.2
MONOCYTES_61
5.1
MONOCYTES_62
5.1
MONOCYTES_63
5.1
MONOCYTES_64
5.0
MONOCYTES_65
5.0
MONOCYTES_66
5.0
MONOCYTES_67
4.9
MONOCYTES_68
4.9
MONOCYTES_69
4.6
MONOCYTES_70
4.6
MONOCYTES_71
4.4
MONOCYTES_72
4.4
MONOCYTES_73
4.4
MONOCYTES_74
4.3
MONOCYTES_75
4.3
MONOCYTES_76
4.2
MONOCYTES_77
4.2
MONOCYTES_78
4.2
MONOCYTES_79
4.1
MONOCYTES_80
4.1
MONOCYTES_81
4.0
MONOCYTES_82
4.0
MONOCYTES_83
4.0
MONOCYTES_84
3.8
MONOCYTES_85
3.8
MONOCYTES_86
3.5
MONOCYTES_87
3.3
MONOCYTES_88
3.1
MONOCYTES_89
3.1
MONOCYTES_90
2.8
MONOCYTES_91
2.6
Show allShow less
Non-classical monocyte TPM: 12.7
Samples: 90
Max TPM: 21.7
Min TPM: 7.7
M2_1
21.7
M2_2
20.9
M2_3
17.8
M2_4
17.5
M2_5
17.5
M2_6
17.5
M2_7
17.3
M2_8
17.3
M2_9
17.3
M2_10
17.1
M2_11
17.1
M2_12
16.0
M2_13
16.0
M2_14
15.7
M2_15
15.3
M2_16
15.1
M2_17
15.1
M2_18
15.0
M2_19
15.0
M2_20
14.6
M2_21
14.4
M2_22
14.2
M2_23
14.1
M2_24
14.1
M2_25
14.1
M2_26
14.0
M2_27
14.0
M2_28
13.9
M2_29
13.9
M2_30
13.8
M2_31
13.7
M2_32
13.5
M2_33
13.5
M2_34
13.2
M2_35
13.2
M2_36
13.1
M2_37
13.1
M2_38
12.8
M2_39
12.7
M2_40
12.6
M2_41
12.5
M2_42
12.5
M2_43
12.4
M2_44
12.4
M2_45
12.3
M2_46
12.2
M2_47
12.2
M2_48
12.1
M2_49
12.1
M2_50
12.0
M2_51
12.0
M2_52
12.0
M2_53
12.0
M2_54
12.0
M2_55
11.9
M2_56
11.9
M2_57
11.7
M2_58
11.6
M2_59
11.5
M2_60
11.5
M2_61
11.4
M2_62
11.3
M2_63
11.3
M2_64
11.1
M2_65
11.1
M2_66
11.1
M2_67
11.0
M2_68
10.8
M2_69
10.8
M2_70
10.7
M2_71
10.7
M2_72
10.4
M2_73
10.2
M2_74
10.2
M2_75
10.0
M2_76
10.0
M2_77
9.9
M2_78
9.3
M2_79
9.3
M2_80
9.3
M2_81
9.3
M2_82
8.7
M2_83
8.7
M2_84
8.5
M2_85
8.4
M2_86
8.2
M2_87
8.0
M2_88
8.0
M2_89
7.8
M2_90
7.7
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
