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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:283.0 nTPM
HPA Brain:232.7 nTPM
GTEx:283.0 nTPM
FANTOM5:271.4 Scaled Tags Per Million
Pig:352.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

232.7
Sample id Sample description nTPM
Amygdala
nTPM: 121.2
1987 Female, age 91, left hemisphere 297.8
2517 Female, age 94, left hemisphere 158.3
2514 Male, age 75, right hemisphere 108.1
2695 Female, age 67, right hemisphere 28.1
2814 Male, age 76, right hemisphere 13.9
Basal amygdala
nTPM: 161.1
2243 Female, age 91, right hemisphere 459.1
2110 Male, age 80, left hemisphere 165.3
2685 Female, age 94, left hemisphere 111.4
2827 Female, age 67, right hemisphere 95.0
1955 Male, age 76, both hemispheres 71.4
2609 Male, age 75, right hemisphere 64.2
Central amygdala
nTPM: 115.3
2701 Female, age 91, right hemisphere 212.4
2239 Male, age 80, left hemisphere 210.0
2515 Male, age 75, right hemisphere 76.0
2826 Female, age 94, left hemisphere 63.9
1905 Male, age 76, both hemispheres 14.2
Corticomedial amygdala
nTPM: 232.7
2242 Female, age 91, right hemisphere 589.0
2829 Male, age 80, left hemisphere 397.0
2535 Female, age 67, right hemisphere 162.0
2429 Female, age 94, left hemisphere 100.6
2240 Male, age 76, both hemispheres 81.2
2428 Male, age 75, right hemisphere 66.1
Lateral amygdala
nTPM: 98.8
2255 Female, age 91, right hemisphere 211.4
1883 Male, age 76, both hemispheres 124.7
2830 Female, age 67, right hemisphere 80.7
2256 Male, age 80, left hemisphere 75.7
2534 Female, age 94, left hemisphere 53.3
2516 Male, age 75, right hemisphere 46.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

283.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 283.0
Samples: 181

Max nTPM: 1031.0
Min nTPM: 19.5
Std nTPM: 206.5
Median nTPM: 237.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1031.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1019.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 988.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 885.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 857.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 799.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 758.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 729.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 713.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 668.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 644.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 631.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 629.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 618.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 590.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 570.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 561.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 539.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 525.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 521.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 503.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 500.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 500.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 494.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 488.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 485.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 471.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 469.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 465.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 463.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 460.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 458.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 457.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 456.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 442.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 437.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 428.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 427.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 426.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 419.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 413.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 408.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 407.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 400.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 399.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 396.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 394.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 389.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 381.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 381.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 378.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 376.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 374.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 374.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 374.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 374.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 371.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 369.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 362.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 357.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 354.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 351.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 341.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 332.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 327.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 320.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 313.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 312.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 311.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 309.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 307.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 306.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 296.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 282.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 280.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 274.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 273.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 271.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 268.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 267.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 265.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 251.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 251.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 250.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 248.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 242.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 241.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 240.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 240.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 237.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 237.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 233.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 230.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 230.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 229.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 224.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 218.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 214.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 200.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 198.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 198.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 197.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 193.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 191.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 189.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 187.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 185.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 184.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 180.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 179.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 178.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 177.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 175.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 173.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 172.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 170.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 169.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 166.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 164.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 161.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 157.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 157.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 156.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 155.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 152.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 145.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 144.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 143.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 139.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 138.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 137.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 134.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 132.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 132.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 128.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 127.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 126.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 124.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 124.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 122.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 122.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 114.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 111.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 108.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 106.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 106.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 102.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 101.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 100.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 100.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 95.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 95.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 88.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 85.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 83.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 79.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 79.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 74.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 73.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 67.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 66.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 66.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 65.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 62.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 57.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 54.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 52.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 51.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 51.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 46.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 45.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 43.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 41.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 39.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 38.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 34.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 32.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 28.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 23.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 21.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 19.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

271.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 271.4
FF:10151-102I7 76 years, female 271.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

352.4
Pig sample Sample description nTPM
Amygdala
nTPM: 352.4
Samples: 4

Max nTPM: 523.7
Min nTPM: 210.4
Sample A Female 523.7
Sample B Female 210.4
Sample C Male 388.2
Sample D Male 287.2

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