A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.5
nTPM
Monaco:
59.2
nTPM
Schmiedel:
58.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.5
HPA sample
nTPM
Classical monocyte nTPM: 7.4
Samples: 6
Max nTPM: 10.2
Min nTPM: 5.3
P10809_1003
5.3
P10809_1020
9.5
P10809_1039
10.2
P10809_1058
6.5
P10809_1080
6.0
P10809_1107
7.1
Intermediate monocyte nTPM: 8.8
Samples: 6
Max nTPM: 11.0
Min nTPM: 6.7
P10809_1004
11.0
P10809_1023
7.7
P10809_1042
7.9
P10809_1061
10.7
P10809_1081
8.9
P10809_1108
6.7
Non-classical monocyte nTPM: 12.5
Samples: 5
Max nTPM: 14.9
Min nTPM: 8.7
P10809_1005
12.5
P10809_1053
13.8
P10809_1072
14.9
P10809_1082
8.7
P10809_1109
12.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.2
Monaco sample
nTPM
Classical monocyte nTPM: 43.4
Samples: 4
Max nTPM: 49.2
Min nTPM: 36.7
RHH5313_R3680
49.2
RHH5221_R3593
47.0
RHH5250_R3622
40.7
RHH5279_R3651
36.7
Intermediate monocyte nTPM: 40.8
Samples: 4
Max nTPM: 46.4
Min nTPM: 37.7
RHH5314_R3681
46.4
RHH5222_R3594
37.9
RHH5251_R3623
37.7
RHH5280_R3652
41.1
Non-classical monocyte nTPM: 59.3
Samples: 4
Max nTPM: 71.4
Min nTPM: 49.9
RHH5315_R3682
71.4
RHH5223_R3595
62.0
RHH5252_R3624
53.7
RHH5281_R3653
49.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.2
Schmiedel sample id
TPM
Classical monocyte TPM: 31.0
Samples: 91
Max TPM: 43.5
Min TPM: 23.1
MONOCYTES_1
43.5
MONOCYTES_2
41.3
MONOCYTES_3
39.8
MONOCYTES_4
39.7
MONOCYTES_5
39.0
MONOCYTES_6
38.7
MONOCYTES_7
38.3
MONOCYTES_8
37.7
MONOCYTES_9
37.4
MONOCYTES_10
36.6
MONOCYTES_11
36.5
MONOCYTES_12
36.4
MONOCYTES_13
36.3
MONOCYTES_14
35.9
MONOCYTES_15
35.7
MONOCYTES_16
35.7
MONOCYTES_17
35.4
MONOCYTES_18
35.2
MONOCYTES_19
35.0
MONOCYTES_20
34.9
MONOCYTES_21
34.4
MONOCYTES_22
34.3
MONOCYTES_23
34.1
MONOCYTES_24
33.6
MONOCYTES_25
33.3
MONOCYTES_26
33.3
MONOCYTES_27
33.3
MONOCYTES_28
33.2
MONOCYTES_29
33.0
MONOCYTES_30
32.9
MONOCYTES_31
32.8
MONOCYTES_32
32.7
MONOCYTES_33
32.7
MONOCYTES_34
32.5
MONOCYTES_35
32.3
MONOCYTES_36
32.2
MONOCYTES_37
32.0
MONOCYTES_38
31.9
MONOCYTES_39
31.8
MONOCYTES_40
31.8
MONOCYTES_41
31.5
MONOCYTES_42
31.0
MONOCYTES_43
30.9
MONOCYTES_44
30.6
MONOCYTES_45
30.6
MONOCYTES_46
30.6
MONOCYTES_47
30.5
MONOCYTES_48
30.4
MONOCYTES_49
30.2
MONOCYTES_50
29.7
MONOCYTES_51
29.5
MONOCYTES_52
29.1
MONOCYTES_53
28.9
MONOCYTES_54
28.9
MONOCYTES_55
28.8
MONOCYTES_56
28.8
MONOCYTES_57
28.7
MONOCYTES_58
28.6
MONOCYTES_59
28.6
MONOCYTES_60
28.6
MONOCYTES_61
28.3
MONOCYTES_62
28.1
MONOCYTES_63
28.1
MONOCYTES_64
28.1
MONOCYTES_65
28.0
MONOCYTES_66
28.0
MONOCYTES_67
27.7
MONOCYTES_68
27.7
MONOCYTES_69
27.4
MONOCYTES_70
27.4
MONOCYTES_71
27.4
MONOCYTES_72
27.1
MONOCYTES_73
27.1
MONOCYTES_74
27.0
MONOCYTES_75
26.9
MONOCYTES_76
26.8
MONOCYTES_77
26.8
MONOCYTES_78
26.7
MONOCYTES_79
26.4
MONOCYTES_80
26.0
MONOCYTES_81
25.9
MONOCYTES_82
25.3
MONOCYTES_83
25.1
MONOCYTES_84
24.7
MONOCYTES_85
24.6
MONOCYTES_86
24.6
MONOCYTES_87
24.5
MONOCYTES_88
24.0
MONOCYTES_89
23.7
MONOCYTES_90
23.2
MONOCYTES_91
23.1
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Non-classical monocyte TPM: 58.2
Samples: 90
Max TPM: 81.7
Min TPM: 38.8
M2_1
81.7
M2_2
81.4
M2_3
79.4
M2_4
78.9
M2_5
78.7
M2_6
77.9
M2_7
76.9
M2_8
74.8
M2_9
73.5
M2_10
71.5
M2_11
71.4
M2_12
71.2
M2_13
71.2
M2_14
71.1
M2_15
70.8
M2_16
69.7
M2_17
68.9
M2_18
68.2
M2_19
65.8
M2_20
65.6
M2_21
65.1
M2_22
65.0
M2_23
63.8
M2_24
63.1
M2_25
62.2
M2_26
62.2
M2_27
62.2
M2_28
61.5
M2_29
61.4
M2_30
61.1
M2_31
60.3
M2_32
60.2
M2_33
59.3
M2_34
59.1
M2_35
59.0
M2_36
58.8
M2_37
58.8
M2_38
58.7
M2_39
58.4
M2_40
58.2
M2_41
57.3
M2_42
57.2
M2_43
57.0
M2_44
57.0
M2_45
56.9
M2_46
56.6
M2_47
56.2
M2_48
55.9
M2_49
55.7
M2_50
55.5
M2_51
55.4
M2_52
54.8
M2_53
54.8
M2_54
54.7
M2_55
54.6
M2_56
54.6
M2_57
54.4
M2_58
53.8
M2_59
53.6
M2_60
53.0
M2_61
52.8
M2_62
52.2
M2_63
52.0
M2_64
51.8
M2_65
51.8
M2_66
51.7
M2_67
51.6
M2_68
51.6
M2_69
51.3
M2_70
51.2
M2_71
51.2
M2_72
51.0
M2_73
50.1
M2_74
49.8
M2_75
49.4
M2_76
49.3
M2_77
48.3
M2_78
47.8
M2_79
47.7
M2_80
47.3
M2_81
47.1
M2_82
46.6
M2_83
46.1
M2_84
45.0
M2_85
44.4
M2_86
44.0
M2_87
42.6
M2_88
41.2
M2_89
39.4
M2_90
38.8
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