A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.3
nTPM
Monaco:
14.0
nTPM
Schmiedel:
95.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.3
HPA sample
nTPM
Classical monocyte nTPM: 1.3
Samples: 6
Max nTPM: 1.9
Min nTPM: 0.9
P10809_1003
0.9
P10809_1020
1.2
P10809_1039
1.1
P10809_1058
1.9
P10809_1080
1.5
P10809_1107
1.5
Intermediate monocyte nTPM: 2.2
Samples: 6
Max nTPM: 3.8
Min nTPM: 1.1
P10809_1004
1.3
P10809_1023
1.1
P10809_1042
3.8
P10809_1061
2.3
P10809_1081
3.4
P10809_1108
1.5
Non-classical monocyte nTPM: 1.6
Samples: 5
Max nTPM: 2.9
Min nTPM: 0.0
P10809_1005
1.0
P10809_1053
1.4
P10809_1072
0.0
P10809_1082
2.9
P10809_1109
2.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.0
Monaco sample
nTPM
Classical monocyte nTPM: 9.8
Samples: 4
Max nTPM: 11.2
Min nTPM: 7.3
RHH5313_R3680
11.2
RHH5221_R3593
7.3
RHH5250_R3622
11.1
RHH5279_R3651
9.6
Intermediate monocyte nTPM: 14.1
Samples: 4
Max nTPM: 18.0
Min nTPM: 10.2
RHH5314_R3681
13.5
RHH5222_R3594
10.2
RHH5251_R3623
18.0
RHH5280_R3652
14.5
Non-classical monocyte nTPM: 13.6
Samples: 4
Max nTPM: 16.6
Min nTPM: 8.0
RHH5315_R3682
16.6
RHH5223_R3595
8.0
RHH5252_R3624
16.2
RHH5281_R3653
13.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
95.7
Schmiedel sample id
TPM
Classical monocyte TPM: 54.8
Samples: 91
Max TPM: 74.3
Min TPM: 43.8
MONOCYTES_1
74.3
MONOCYTES_2
73.6
MONOCYTES_3
70.1
MONOCYTES_4
70.1
MONOCYTES_5
67.7
MONOCYTES_6
64.2
MONOCYTES_7
64.0
MONOCYTES_8
63.7
MONOCYTES_9
63.0
MONOCYTES_10
62.0
MONOCYTES_11
61.9
MONOCYTES_12
61.4
MONOCYTES_13
60.6
MONOCYTES_14
59.9
MONOCYTES_15
59.8
MONOCYTES_16
59.7
MONOCYTES_17
59.4
MONOCYTES_18
59.3
MONOCYTES_19
59.0
MONOCYTES_20
58.7
MONOCYTES_21
58.6
MONOCYTES_22
58.5
MONOCYTES_23
57.7
MONOCYTES_24
57.6
MONOCYTES_25
57.4
MONOCYTES_26
57.0
MONOCYTES_27
56.8
MONOCYTES_28
56.5
MONOCYTES_29
56.5
MONOCYTES_30
56.2
MONOCYTES_31
56.1
MONOCYTES_32
56.0
MONOCYTES_33
55.9
MONOCYTES_34
55.8
MONOCYTES_35
55.7
MONOCYTES_36
55.7
MONOCYTES_37
55.6
MONOCYTES_38
55.6
MONOCYTES_39
55.4
MONOCYTES_40
55.3
MONOCYTES_41
55.3
MONOCYTES_42
55.2
MONOCYTES_43
54.9
MONOCYTES_44
54.9
MONOCYTES_45
54.8
MONOCYTES_46
54.8
MONOCYTES_47
54.6
MONOCYTES_48
54.5
MONOCYTES_49
54.1
MONOCYTES_50
53.8
MONOCYTES_51
53.7
MONOCYTES_52
53.5
MONOCYTES_53
53.5
MONOCYTES_54
53.3
MONOCYTES_55
53.1
MONOCYTES_56
52.7
MONOCYTES_57
52.7
MONOCYTES_58
52.6
MONOCYTES_59
52.5
MONOCYTES_60
52.0
MONOCYTES_61
51.9
MONOCYTES_62
51.5
MONOCYTES_63
51.3
MONOCYTES_64
51.3
MONOCYTES_65
51.2
MONOCYTES_66
51.2
MONOCYTES_67
51.1
MONOCYTES_68
51.1
MONOCYTES_69
51.1
MONOCYTES_70
50.7
MONOCYTES_71
50.4
MONOCYTES_72
50.4
MONOCYTES_73
50.1
MONOCYTES_74
50.1
MONOCYTES_75
49.7
MONOCYTES_76
49.3
MONOCYTES_77
48.7
MONOCYTES_78
48.2
MONOCYTES_79
48.1
MONOCYTES_80
48.0
MONOCYTES_81
47.7
MONOCYTES_82
47.6
MONOCYTES_83
47.1
MONOCYTES_84
46.0
MONOCYTES_85
45.6
MONOCYTES_86
45.6
MONOCYTES_87
44.8
MONOCYTES_88
44.7
MONOCYTES_89
44.6
MONOCYTES_90
44.1
MONOCYTES_91
43.8
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Non-classical monocyte TPM: 95.7
Samples: 90
Max TPM: 135.3
Min TPM: 53.5
M2_1
135.3
M2_2
132.2
M2_3
126.1
M2_4
125.6
M2_5
123.0
M2_6
122.6
M2_7
120.8
M2_8
120.7
M2_9
120.5
M2_10
120.5
M2_11
120.1
M2_12
119.9
M2_13
119.8
M2_14
119.4
M2_15
117.6
M2_16
115.7
M2_17
114.7
M2_18
113.6
M2_19
112.3
M2_20
110.9
M2_21
109.4
M2_22
107.7
M2_23
107.4
M2_24
104.0
M2_25
103.8
M2_26
103.2
M2_27
103.0
M2_28
102.9
M2_29
102.4
M2_30
102.0
M2_31
101.0
M2_32
101.0
M2_33
100.9
M2_34
100.3
M2_35
100.2
M2_36
99.2
M2_37
99.1
M2_38
98.4
M2_39
98.3
M2_40
98.2
M2_41
97.9
M2_42
97.3
M2_43
96.9
M2_44
96.9
M2_45
96.4
M2_46
96.4
M2_47
94.9
M2_48
94.8
M2_49
94.3
M2_50
93.4
M2_51
93.3
M2_52
92.7
M2_53
91.9
M2_54
91.7
M2_55
91.6
M2_56
90.3
M2_57
88.5
M2_58
88.4
M2_59
88.0
M2_60
87.5
M2_61
87.1
M2_62
86.4
M2_63
85.5
M2_64
85.3
M2_65
85.0
M2_66
84.5
M2_67
84.1
M2_68
84.1
M2_69
84.1
M2_70
84.0
M2_71
83.2
M2_72
82.5
M2_73
81.2
M2_74
76.8
M2_75
76.8
M2_76
76.6
M2_77
75.6
M2_78
75.3
M2_79
75.1
M2_80
74.8
M2_81
74.6
M2_82
73.2
M2_83
72.1
M2_84
71.6
M2_85
69.5
M2_86
68.9
M2_87
67.2
M2_88
64.9
M2_89
55.2
M2_90
53.5
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