A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
35.4
nTPM
Monaco:
278.3
nTPM
Schmiedel:
212.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.4
HPA sample
nTPM
Classical monocyte nTPM: 12.5
Samples: 6
Max nTPM: 18.8
Min nTPM: 8.5
P10809_1003
18.8
P10809_1020
12.6
P10809_1039
8.5
P10809_1058
9.4
P10809_1080
11.0
P10809_1107
14.8
Intermediate monocyte nTPM: 25.4
Samples: 6
Max nTPM: 38.5
Min nTPM: 13.4
P10809_1004
31.1
P10809_1023
26.6
P10809_1042
38.5
P10809_1061
20.2
P10809_1081
13.4
P10809_1108
22.3
Non-classical monocyte nTPM: 35.4
Samples: 5
Max nTPM: 51.1
Min nTPM: 26.4
P10809_1005
51.1
P10809_1053
28.8
P10809_1072
37.0
P10809_1082
26.4
P10809_1109
33.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
278.3
Monaco sample
nTPM
Classical monocyte nTPM: 102.4
Samples: 4
Max nTPM: 115.8
Min nTPM: 89.2
RHH5313_R3680
102.5
RHH5221_R3593
102.0
RHH5250_R3622
115.8
RHH5279_R3651
89.2
Intermediate monocyte nTPM: 221.6
Samples: 4
Max nTPM: 277.0
Min nTPM: 164.5
RHH5314_R3681
180.7
RHH5222_R3594
277.0
RHH5251_R3623
264.2
RHH5280_R3652
164.5
Non-classical monocyte nTPM: 278.3
Samples: 4
Max nTPM: 334.3
Min nTPM: 223.1
RHH5315_R3682
275.4
RHH5223_R3595
334.3
RHH5252_R3624
280.4
RHH5281_R3653
223.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
212.5
Schmiedel sample id
TPM
Classical monocyte TPM: 179.6
Samples: 91
Max TPM: 370.4
Min TPM: 90.3
MONOCYTES_1
370.4
MONOCYTES_2
293.0
MONOCYTES_3
290.9
MONOCYTES_4
289.1
MONOCYTES_5
285.9
MONOCYTES_6
276.6
MONOCYTES_7
262.7
MONOCYTES_8
257.8
MONOCYTES_9
256.7
MONOCYTES_10
255.5
MONOCYTES_11
255.3
MONOCYTES_12
252.1
MONOCYTES_13
251.4
MONOCYTES_14
251.0
MONOCYTES_15
248.0
MONOCYTES_16
247.8
MONOCYTES_17
243.5
MONOCYTES_18
239.4
MONOCYTES_19
236.1
MONOCYTES_20
228.4
MONOCYTES_21
222.4
MONOCYTES_22
220.5
MONOCYTES_23
220.0
MONOCYTES_24
219.7
MONOCYTES_25
218.5
MONOCYTES_26
215.8
MONOCYTES_27
214.4
MONOCYTES_28
210.6
MONOCYTES_29
201.5
MONOCYTES_30
197.7
MONOCYTES_31
197.4
MONOCYTES_32
195.3
MONOCYTES_33
194.8
MONOCYTES_34
191.9
MONOCYTES_35
191.6
MONOCYTES_36
191.0
MONOCYTES_37
189.0
MONOCYTES_38
181.9
MONOCYTES_39
180.7
MONOCYTES_40
176.7
MONOCYTES_41
174.0
MONOCYTES_42
172.7
MONOCYTES_43
171.2
MONOCYTES_44
170.7
MONOCYTES_45
170.5
MONOCYTES_46
170.3
MONOCYTES_47
168.9
MONOCYTES_48
167.2
MONOCYTES_49
165.6
MONOCYTES_50
165.4
MONOCYTES_51
164.3
MONOCYTES_52
164.0
MONOCYTES_53
159.6
MONOCYTES_54
159.3
MONOCYTES_55
158.7
MONOCYTES_56
158.6
MONOCYTES_57
157.4
MONOCYTES_58
156.8
MONOCYTES_59
155.6
MONOCYTES_60
147.9
MONOCYTES_61
147.9
MONOCYTES_62
146.9
MONOCYTES_63
143.8
MONOCYTES_64
143.8
MONOCYTES_65
143.7
MONOCYTES_66
141.8
MONOCYTES_67
135.0
MONOCYTES_68
130.2
MONOCYTES_69
129.5
MONOCYTES_70
129.0
MONOCYTES_71
128.6
MONOCYTES_72
127.2
MONOCYTES_73
126.5
MONOCYTES_74
124.2
MONOCYTES_75
124.0
MONOCYTES_76
122.5
MONOCYTES_77
120.4
MONOCYTES_78
116.4
MONOCYTES_79
112.7
MONOCYTES_80
112.6
MONOCYTES_81
112.2
MONOCYTES_82
108.4
MONOCYTES_83
107.0
MONOCYTES_84
105.1
MONOCYTES_85
105.0
MONOCYTES_86
104.7
MONOCYTES_87
104.6
MONOCYTES_88
103.6
MONOCYTES_89
96.3
MONOCYTES_90
95.7
MONOCYTES_91
90.3
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Non-classical monocyte TPM: 212.5
Samples: 90
Max TPM: 356.7
Min TPM: 71.1
M2_1
356.7
M2_2
355.0
M2_3
353.3
M2_4
351.2
M2_5
347.0
M2_6
335.2
M2_7
318.2
M2_8
318.2
M2_9
306.7
M2_10
305.7
M2_11
304.9
M2_12
302.2
M2_13
298.8
M2_14
295.5
M2_15
295.1
M2_16
286.4
M2_17
280.0
M2_18
279.4
M2_19
277.8
M2_20
275.4
M2_21
271.1
M2_22
268.0
M2_23
267.3
M2_24
266.5
M2_25
264.9
M2_26
261.4
M2_27
258.0
M2_28
257.4
M2_29
256.4
M2_30
256.1
M2_31
251.7
M2_32
249.0
M2_33
245.7
M2_34
245.3
M2_35
242.5
M2_36
235.4
M2_37
230.1
M2_38
227.9
M2_39
227.5
M2_40
225.1
M2_41
223.8
M2_42
223.7
M2_43
223.6
M2_44
221.9
M2_45
221.2
M2_46
220.6
M2_47
219.2
M2_48
218.4
M2_49
216.3
M2_50
216.0
M2_51
204.6
M2_52
200.5
M2_53
199.3
M2_54
197.3
M2_55
195.5
M2_56
188.3
M2_57
185.6
M2_58
184.7
M2_59
176.6
M2_60
175.8
M2_61
171.8
M2_62
171.5
M2_63
165.8
M2_64
161.6
M2_65
158.6
M2_66
154.7
M2_67
151.6
M2_68
140.7
M2_69
140.7
M2_70
140.3
M2_71
136.7
M2_72
133.9
M2_73
133.8
M2_74
130.2
M2_75
128.5
M2_76
124.7
M2_77
124.0
M2_78
119.9
M2_79
115.7
M2_80
115.0
M2_81
106.0
M2_82
104.3
M2_83
103.2
M2_84
102.3
M2_85
102.1
M2_86
94.6
M2_87
93.4
M2_88
85.2
M2_89
79.4
M2_90
71.1
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