A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.6
nTPM
Monaco:
26.1
nTPM
Schmiedel:
104.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.6
HPA sample
nTPM
Classical monocyte nTPM: 0.9
Samples: 6
Max nTPM: 1.3
Min nTPM: 0.6
P10809_1003
0.8
P10809_1020
0.7
P10809_1039
0.8
P10809_1058
0.6
P10809_1080
1.3
P10809_1107
1.2
Intermediate monocyte nTPM: 1.6
Samples: 6
Max nTPM: 3.2
Min nTPM: 0.0
P10809_1004
2.5
P10809_1023
0.6
P10809_1042
2.5
P10809_1061
0.0
P10809_1081
0.7
P10809_1108
3.2
Non-classical monocyte nTPM: 1.3
Samples: 5
Max nTPM: 2.1
Min nTPM: 0.5
P10809_1005
2.1
P10809_1053
1.9
P10809_1072
0.9
P10809_1082
0.5
P10809_1109
1.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.1
Monaco sample
nTPM
Classical monocyte nTPM: 26.1
Samples: 4
Max nTPM: 31.6
Min nTPM: 19.3
RHH5313_R3680
28.1
RHH5221_R3593
31.6
RHH5250_R3622
19.3
RHH5279_R3651
25.4
Intermediate monocyte nTPM: 25.4
Samples: 4
Max nTPM: 48.6
Min nTPM: 16.4
RHH5314_R3681
16.4
RHH5222_R3594
19.7
RHH5251_R3623
48.6
RHH5280_R3652
17.0
Non-classical monocyte nTPM: 18.4
Samples: 4
Max nTPM: 22.3
Min nTPM: 11.3
RHH5315_R3682
18.1
RHH5223_R3595
11.3
RHH5252_R3624
21.9
RHH5281_R3653
22.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
104.5
Schmiedel sample id
TPM
Classical monocyte TPM: 82.7
Samples: 91
Max TPM: 125.2
Min TPM: 53.0
MONOCYTES_1
125.2
MONOCYTES_2
111.0
MONOCYTES_3
110.9
MONOCYTES_4
106.4
MONOCYTES_5
106.3
MONOCYTES_6
104.1
MONOCYTES_7
101.9
MONOCYTES_8
100.1
MONOCYTES_9
99.5
MONOCYTES_10
99.5
MONOCYTES_11
98.9
MONOCYTES_12
98.0
MONOCYTES_13
96.7
MONOCYTES_14
96.0
MONOCYTES_15
95.6
MONOCYTES_16
95.4
MONOCYTES_17
94.1
MONOCYTES_18
93.3
MONOCYTES_19
91.9
MONOCYTES_20
91.7
MONOCYTES_21
91.5
MONOCYTES_22
90.6
MONOCYTES_23
88.8
MONOCYTES_24
88.7
MONOCYTES_25
88.6
MONOCYTES_26
88.0
MONOCYTES_27
87.8
MONOCYTES_28
87.7
MONOCYTES_29
87.7
MONOCYTES_30
87.6
MONOCYTES_31
87.0
MONOCYTES_32
86.6
MONOCYTES_33
86.1
MONOCYTES_34
86.0
MONOCYTES_35
85.2
MONOCYTES_36
84.9
MONOCYTES_37
84.8
MONOCYTES_38
83.8
MONOCYTES_39
83.7
MONOCYTES_40
83.4
MONOCYTES_41
82.7
MONOCYTES_42
82.4
MONOCYTES_43
82.3
MONOCYTES_44
82.0
MONOCYTES_45
81.8
MONOCYTES_46
81.8
MONOCYTES_47
81.5
MONOCYTES_48
81.0
MONOCYTES_49
80.9
MONOCYTES_50
80.4
MONOCYTES_51
80.3
MONOCYTES_52
80.2
MONOCYTES_53
78.8
MONOCYTES_54
78.7
MONOCYTES_55
77.9
MONOCYTES_56
77.7
MONOCYTES_57
77.7
MONOCYTES_58
77.6
MONOCYTES_59
77.2
MONOCYTES_60
76.8
MONOCYTES_61
76.5
MONOCYTES_62
76.5
MONOCYTES_63
76.2
MONOCYTES_64
76.1
MONOCYTES_65
75.8
MONOCYTES_66
75.5
MONOCYTES_67
75.4
MONOCYTES_68
75.1
MONOCYTES_69
74.9
MONOCYTES_70
74.2
MONOCYTES_71
73.5
MONOCYTES_72
73.5
MONOCYTES_73
73.5
MONOCYTES_74
72.6
MONOCYTES_75
72.6
MONOCYTES_76
72.3
MONOCYTES_77
71.6
MONOCYTES_78
70.9
MONOCYTES_79
68.8
MONOCYTES_80
68.3
MONOCYTES_81
67.9
MONOCYTES_82
67.7
MONOCYTES_83
67.3
MONOCYTES_84
67.2
MONOCYTES_85
66.5
MONOCYTES_86
66.4
MONOCYTES_87
62.7
MONOCYTES_88
62.3
MONOCYTES_89
60.4
MONOCYTES_90
59.8
MONOCYTES_91
53.0
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Non-classical monocyte TPM: 104.5
Samples: 90
Max TPM: 166.4
Min TPM: 68.1
M2_1
166.4
M2_2
165.6
M2_3
156.3
M2_4
151.8
M2_5
144.3
M2_6
142.8
M2_7
137.8
M2_8
135.0
M2_9
134.3
M2_10
130.7
M2_11
129.6
M2_12
128.8
M2_13
126.2
M2_14
122.9
M2_15
122.5
M2_16
116.6
M2_17
116.2
M2_18
114.9
M2_19
114.9
M2_20
114.7
M2_21
114.2
M2_22
114.1
M2_23
113.7
M2_24
113.6
M2_25
111.2
M2_26
111.0
M2_27
110.9
M2_28
109.0
M2_29
107.3
M2_30
106.1
M2_31
106.1
M2_32
106.0
M2_33
105.7
M2_34
105.7
M2_35
105.5
M2_36
105.2
M2_37
105.2
M2_38
104.5
M2_39
103.7
M2_40
103.4
M2_41
103.2
M2_42
102.8
M2_43
102.8
M2_44
102.2
M2_45
102.1
M2_46
100.6
M2_47
100.2
M2_48
99.9
M2_49
99.5
M2_50
99.1
M2_51
98.8
M2_52
97.7
M2_53
97.4
M2_54
97.2
M2_55
97.1
M2_56
96.5
M2_57
96.4
M2_58
96.2
M2_59
95.9
M2_60
95.5
M2_61
93.5
M2_62
91.5
M2_63
91.3
M2_64
91.0
M2_65
90.9
M2_66
90.9
M2_67
90.7
M2_68
90.7
M2_69
90.5
M2_70
89.8
M2_71
89.4
M2_72
88.8
M2_73
88.6
M2_74
88.5
M2_75
88.2
M2_76
87.9
M2_77
87.3
M2_78
86.3
M2_79
85.5
M2_80
85.2
M2_81
84.8
M2_82
84.0
M2_83
84.0
M2_84
83.7
M2_85
83.0
M2_86
82.5
M2_87
82.3
M2_88
77.8
M2_89
75.5
M2_90
68.1
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